BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	minE	= 1152546	79 (0.740)	11 (0.120)	3/82	NT	10.4%	coding (83/576 nt)	ydjR	conserved hypothetical protein
*	?	minE	= 1152570	123 (1.390)	11 (0.120)	3/82	NT	10.4%	coding (59/576 nt)	ydjR	conserved hypothetical protein

Only 100 of 147 total aligned reads displayed.

CAAAGAAAACTCCCCATTCGCCGCGATGGATGCAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGTTTCACCGGCAGCATTTCGCCACAGATTCACCGACATTTTACGCATATC  >  minE/1152476‑1152616

cAAAGAAAACTCCCCATTCGCCGCGATGGATGCAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTG                                                                        >  1:5253235‑M1/1‑71 (MQ=255)

 aaaGAAAACTCCCCATTCGCCGCGATGGATGCAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTgg                                                                       <  1:3175993/71‑1 (MQ=255)

 aaaGAAAACTCCCCATTCGCCGCGATGGATGCAATGCTGGCACGCCACTAAAAATCACGTTTTGCCGGTgg                                                                       <  1:1524960/71‑1 (MQ=255)

  aaGAAAACTCCCCATTCGCCGCGATGGATGCAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTgg                                                                       <  1:3585149/70‑1 (MQ=255)

  aaGAAAACTCCCCATTCGCCGCGATGGATGCAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTgg                                                                       <  1:2739747/70‑1 (MQ=255)

   aGAAAACTCCCCATTCGCCGCGATGGATGCAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTggg                                                                      >  1:3212984/1‑70 (MQ=255)

     aaaaCTCCCCATTCGCCGCGATGGATGCAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAAc                                                                   <  1:4544308/71‑1 (MQ=255)

      aaaCTCCCCATTCGCCGCGATGGATGCAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAAc                                                                   <  1:3414418/70‑1 (MQ=255)

      aaaCTCCCCATTCGCCGCGATGGATGCAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAAc                                                                   <  1:24499/70‑1 (MQ=255)

      aaaCTCCCCATTCGCCGCGATGGATGCAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAAc                                                                   <  1:618297/70‑1 (MQ=255)

       aaCTCCCCATTCGCCGCGATGGATGCAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAACGt                                                                 >  1:4710710/1‑71 (MQ=255)

       aaCTCCCCATTCGCCGCGATGGATGCAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAACGt                                                                 >  1:5621246/1‑71 (MQ=255)

       aaCTCCCCATTCGCCGCGATGGATGCAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAACGt                                                                 >  1:2128550/1‑71 (MQ=255)

           ccccATTCGCCGCGATGGATGCAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAACGTGCa                                                              >  1:2620000/1‑70 (MQ=255)

            cccATTCGCCGCGATGGATGCAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAACGTGCaaa                                                            <  1:2343620/71‑1 (MQ=255)

             ccATTCGCCGCGATGGATGCAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGaaacgcgcgaaat                                                           >  1:3275986‑M1/1‑58 (MQ=255)

             ccATTCGCCGCGATGGATGCAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGaaacgcgcgaaa                                                            >  1:6240500‑M1/1‑58 (MQ=255)

             ccATTCGCCGCGATGGATGCAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGaaacgagcgaaat                                                           >  1:2777218‑M1/1‑58 (MQ=255)

              cATTCGCCGCGATGGATGCAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAACGTGCAAAtt                                                          <  1:274379/71‑1 (MQ=255)

              cATTCGCCGCGATGGATGCAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAACGTGCAAAtt                                                          <  1:5126368/71‑1 (MQ=255)

                 tCGCCGCGATGGTTGCAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAACGTGCAAATTTcg                                                       >  1:6015602/1‑71 (MQ=255)

                   gccgcGACGGATGCAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAACGTGCAAATTTcgcg                                                     <  1:6891700/71‑1 (MQ=255)

                      gcgATGGATGCAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGt                                                  <  1:5054585/71‑1 (MQ=255)

                       cgATGGATGCAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGtt                                                 <  1:5854894/71‑1 (MQ=255)

                       cgATGGATGCAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGtt                                                 <  1:1120237/71‑1 (MQ=255)

                       cgATGGATGCAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGtt                                                 <  1:1344804/71‑1 (MQ=255)

                         atggatgCAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGTTTc                                               >  1:1383543‑M2/1‑70 (MQ=255)

                          tggatgCAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGTTTca                                              >  1:5544289‑M2/1‑69 (MQ=255)

                          tggatgCAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGTTTca                                              >  1:5401494‑M2/1‑69 (MQ=255)

                           ggatgCAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGttt                                                >  1:5843019/1‑68 (MQ=255)

                           ggatgCAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGttt                                                >  1:848501/1‑68 (MQ=255)

                           ggatgCAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGttt                                                >  1:4254780/1‑68 (MQ=255)

                           ggatgCAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGttt                                                >  1:1956123/1‑68 (MQ=255)

                            gatgCAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGaaacgcgcgaaatttgcacgttcccacc                                            >  1:4999902‑M1/1‑43 (MQ=255)

                            gatgCAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGaaacgcgcgaaatttgcacgttcccacc                                            >  1:5940606‑M1/1‑43 (MQ=255)

                            gatgCAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGaaacgcgcgaaatttg                                                        >  1:6407264‑M1/1‑43 (MQ=255)

                             atgCAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGaaacgcgcgaaatttgcacgttcccaccg                                           <  1:138058‑M1/71‑30 (MQ=255)

                             atgCAATGCTGGCACGCAAGTAAAAATCACGTTTTGCCGGTGaaacgcgcgaaatttgcacgttcccaccg                                           <  1:6024084‑M1/71‑30 (MQ=255)

                              tgCAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGTTTcaccgg                                          <  1:2431893‑M2/71‑7 (MQ=255)

                               gCAATGCTGGCACGCCAGTAAAAATTACGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGTTTcaccgg                                          <  1:192762‑M2/70‑7 (MQ=255)

                               gCAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAACGTGCAAAttt                                                         >  1:1748328/1‑55 (MQ=255)

                                cAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGGGaa                                                                    >  1:2687013/1‑43 (MQ=255)

                                cAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGTTTcaccgg                                          <  1:913456‑M2/69‑7 (MQ=255)

                                  aTGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTG                                                                        <  1:1898235‑M1/37‑1 (MQ=255)

                                    gCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGTTTCACCGGCAGCAt                                    >  1:1617125/1‑71 (MQ=255)

                                    gCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGTTTCACCGGCAGCAt                                    >  1:5456334/1‑71 (MQ=255)

                                     cTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAACGTGCaa                                                             >  1:4809577/1‑45 (MQ=255)

                                     cTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAACGTGCaa                                                             >  1:1867629/1‑45 (MQ=255)

                                     cTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAACGTGCAAATTTCGCGAGTTTCACCGGCAGCAtt                                   <  1:3160754/71‑1 (MQ=255)

                                        gCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAACGTGCAAATTTcgcgcg                                                   >  1:919361/1‑52 (MQ=255)

                                        gCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGt                                                  >  1:308709/1‑53 (MQ=255)

                                        gCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGt                                                  >  1:4848312/1‑53 (MQ=255)

                                        gCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGt                                                  >  1:4163473/1‑53 (MQ=255)

                                          acaccAGTAAAAATCACGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGTTTCACCGGCAGCATTTCGc                               >  1:2984653/4‑70 (MQ=255)

                                          aCGCCAGTAAAAATCACGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGTTTCACCGGCAGCATTTCGcc                              <  1:6584015/71‑1 (MQ=255)

                                             ccAGTAAAAATCACGTTTTGCCGGTGGGAACGTGCAAATTTcgcg                                                     <  1:3206866/45‑1 (MQ=255)

                                             ccAGTAAAAATCACGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGtt                                                 <  1:2573484/49‑1 (MQ=255)

                                               aGTAAAAATCACGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGTTTCACCGGCAGCATTTCGCCACAGa                         <  1:2421386/71‑1 (MQ=255)

                                                 tAAAAATCACGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGTTTc                                               >  1:1054997‑M2/1‑46 (MQ=255)

                                                  aaaaaTCACGTTTTGCCGGTGGGAACGTGCAAAtt                                                          >  1:1845067/1‑35 (MQ=255)

                                                  aaaaaTCACGTTTTGCCGGTGGGAACGTGCAAAtt                                                          >  1:3701144/1‑35 (MQ=255)

                                                  aaaaaTCACGTTTTGCCGGTGGGAACGTGCAAAtt                                                          >  1:402180/1‑35 (MQ=255)

                                                  aaaaaTCACGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGTTTcaccgg                                          <  1:33930‑M2/51‑7 (MQ=255)

                                                  aaaaaTCACGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGTTTCACCGGCAGCATTTCGCCACAGAtt                       >  1:2686193/1‑70 (MQ=255)

                                                  aaaaaTCACGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGTTTCACCGGCAGCATTTCGCCACAGAtt                       <  1:4952807/70‑1 (MQ=255)

                                                  aaaaaTCACCTTTTGCCGGTGGGAACGTGCAAAtt                                                          >  1:2180312/1‑35 (MQ=255)

                                                   aaaaTCACGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGtt                                                 >  1:4801047/1‑43 (MQ=255)

                                                     aaTCACGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGTTTCACCGGCAGCATTTCGc                               <  1:744593/59‑1 (MQ=255)

                                                     aaTCACGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGTTTCACCGGCAGCATTTCGCcaca                           <  1:5400162/63‑1 (MQ=255)

                                                     aaTCACGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGTTTCACCGGCAGCATTTCGCCACAGATTCAcc                   >  1:81784/1‑71 (MQ=255)

                                                       tCACGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGTTTCACCGGCAGCATTTCGCCACAGATTCACCGa                 >  1:1129536/1‑71 (MQ=255)

                                                         aCGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGTTTCACCGGCAGCATTTCGCCACAGATTCACCGACa               >  1:3127140/1‑71 (MQ=255)

                                                          cGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGTTTCACCGGCAGCATTTCGCCACAGATTCACCGACAt              >  1:460952/1‑71 (MQ=255)

                                                          cGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGTTTCACCGGCAGCATTTCGCCACAGATTCACCGACAt              >  1:5294345/1‑71 (MQ=255)

                                                           gTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGTTTCACCGGCAGCATTTCGCCACAGATTCACCGACAtt             >  1:1063627/1‑71 (MQ=255)

                                                            ttttGCCGGTGGGAACGTGCAAATTTCGCGCGTTTCACCGGCAGCATTTCGCCACAGATTCACCGACAttt            <  1:6561671/71‑1 (MQ=255)

                                                               tGCCGGTGGGAACGTGCAAATTTCGCGCGTTTCACCGGCAGCATTTCGCCACAGATTCACCGACATTTTa          <  1:2328745/70‑1 (MQ=255)

                                                               tGCCGGTGGGAACGTGCAAATTTCGCGCGTTTCACCGGCAGCATTTCGCCACAGATTCACCGACATTTTa          <  1:4474148/70‑1 (MQ=255)

                                                               tGCCGGTGGGAACGTGCAAATTTCGCGCGTTTCACCGGCAGCATTTCGCCACAGATTCACCGACATTTTa          <  1:3148849/70‑1 (MQ=255)

                                                               tGCCGGTGGGAACGTGCAAATTTCGCGCGTTTCACCGGCAGCATTTCGCCACAGATTCACCGACATTTTa          <  1:4568307/70‑1 (MQ=255)

                                                                 ccGGTTGGAACGTGCAAATTTCGCGCGTTTCACCGGCAGCATTTCGCCACAGATTCACCGACATTTTACg        <  1:1316562/70‑1 (MQ=255)

                                                                 ccGGTGaaacgcgcgaaatttgcacgttcccaccggcaaaacgtgatttttactggcgtgccagcattgca       <  1:3134053‑M1/71‑66 (MQ=255)

                                                                 ccGGTGaaacgcgcgaaatttgcacgttcccaccggcaaaacgtgatttttactggcgtgccagcattgca       <  1:314997‑M1/71‑66 (MQ=255)

                                                                 ccGGTGaaacgcgcgaaatttgcacgttcccaccggcaaaacgtgatttttactggcgtgccagcattgc        <  1:4752866‑M1/70‑65 (MQ=255)

                                                                 ccGGTGaaacgcgcgaaatttgcacgttcccaccggcaaaacgtgattttt                           <  1:33930‑M1/51‑46 (MQ=255)

                                                                 ccGGTGGGAACGTGCAAATTTCGCGCGTTTCACCGGCAGCATTTCGCCACAGATTCACCGACATTTTACg        <  1:2753828/70‑1 (MQ=255)

                                                                 ccGGTGGGAACGTGCAAATTTCGCGCGTTTCACCGGCAGCATTTCGCCACAGATTCACCGACATTTTACg        <  1:2398224/70‑1 (MQ=255)

                                                                 ccGGTGGGAACGTGCAAATTTCGCGCGTTTCACCGGCAGCATTTCGCCACAGATTCACCGACATTTTACg        <  1:6732317/70‑1 (MQ=255)

                                                                  cGGTGaaacgcgcgaaatttgcacgttcccaccggcaaaacgtgatttttactggcgtgccagcattgcat      <  1:4332748‑M1/71‑67 (MQ=255)

                                                                  cGGTGGGAACGTGCAAATTTCGCGCGTTTcaccggcaaaacgtgatttttactggcgtgccagcattgcat      <  1:5574295‑M2/71‑43 (MQ=255)

                                                                  cGGTGGGAACGTGCAAATTTCGCGCGTTTcaccggcaaaacgtgatttttactggcgtgccagcattgcat      <  1:2766074‑M2/71‑43 (MQ=255)

                                                                  cGGTGGGAACGTGCAAATTTCGCGCGTTTcaccggcaaaacgtgatttttactggcgtgccagcattgcat      <  1:138058‑M2/71‑43 (MQ=255)

                                                                     tGaaacgcgcgaaatttgcacgttcccaccggcaaaacgtgatttttactggcgtgccagcattgcatcca   >  1:5544289‑M1/1‑2 (MQ=255)

                                                                     tGaaacgcgcgaaatttgcacgttcccaccggcaaaacgtgatttttactggcgtgccagcattgcatcca   >  1:1549061‑M1/1‑2 (MQ=255)

                                                                     tGGGAACGTGCAAATTTCGCGCGTTTCACCGGCAGCATTTCGCCACAGATTCACCGACAtttt           <  1:5381208/63‑1 (MQ=255)

                                                                     agggAACGTGCAAATTTCGCGCGTTTCACCGGCAGCATTTCGCCACAGATTCACCGACATTTTACGCata    >  1:3266208/2‑70 (MQ=255)

                                                                      gggAACGTGCAAATTTCGCGCGTTTCACCGGCAGCATTTCGCCACAGATTCACCGACAtttt           <  1:450835/62‑1 (MQ=255)

                                                                      gaaacgcgcgaaatttgcacgttcccaccggcaaaacgtgatttttactggcgtgccagcattgcatccat  >  1:1446251‑M1/1‑1 (MQ=255)

                                                                      gaaacgcgcgaaatttgcacgttcccaccggcaaaacgtgatttttactggcgtgccagcattgcatccat  >  1:4566743‑M1/1‑1 (MQ=255)

                                                                      gaaacgcgcgaaatttgcacgttcccaccggcaaaacgtgattttta                          >  1:1054997‑M1/1‑1 (MQ=255)

CAAAGAAAACTCCCCATTCGCCGCGATGGATGCAATGCTGGCACGCCAGTAAAAATCACGTTTTGCCGGTGGGAACGTGCAAATTTCGCGCGTTTCACCGGCAGCATTTCGCCACAGATTCACCGACATTTTACGCATATC  >  minE/1152476‑1152616

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.