| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,068,683 | G→C | 7.8% | A369A (GCC→GCG) | aer ← | fused signal transducer for aerotaxis sensory component and methyl accepting chemotaxis component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,068,683 | 0 | G | C | 7.8% | 309.9 / 13.9 | 102 | A369A (GCC→GCG) | aer | fused signal transducer for aerotaxis sensory component and methyl accepting chemotaxis component |
| Reads supporting (aligned to +/- strand): ref base G (57/37); new base C (5/3); total (62/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.17e-01 | |||||||||||
Only 100 of 107 total aligned reads displayed.
TCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACT > minE/2068615‑2068751 | tCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGc > 1:690774/1‑71 (MQ=255) cccTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGc > 1:2361759/1‑69 (MQ=255) tGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGaa > 1:3807709/1‑71 (MQ=255) gCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGaa > 1:3653013/1‑70 (MQ=255) gCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGaa > 1:5694116/1‑70 (MQ=255) gCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGaa > 1:6106353/1‑70 (MQ=255) ccaccaCTGCAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAat < 1:4933363/70‑1 (MQ=255) ccaccaCTGCAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAat < 1:2396378/70‑1 (MQ=255) ccaccaCTGCAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAat < 1:6837769/70‑1 (MQ=255) acTGCAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTg > 1:3518513/1‑69 (MQ=255) acTGCAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGt > 1:1798335/1‑71 (MQ=255) cAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTg > 1:5580555/1‑70 (MQ=255) cAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTg > 1:2414828/1‑70 (MQ=255) cAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGa < 1:5750823/71‑1 (MQ=255) aaaaCCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGa < 1:4013242/70‑1 (MQ=255) aaaaCCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGa < 1:3897389/70‑1 (MQ=255) ccTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGc < 1:4620461/71‑1 (MQ=255) ccTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGc < 1:2833395/71‑1 (MQ=255) gcggCCCTGCTCGCCGGCGCGCGCCGCTTCCACGGCCGCGTTCAGCGCCAGGATATTGGTCTGGAAGGc < 1:6666501/66‑1 (MQ=255) tGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTg > 1:1032553/1‑56 (MQ=255) tGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAata > 1:4407725/1‑71 (MQ=255) gtcccTGTTCACCGGCACGGGCCGCTTCCACTGCCGCGTTGAGCGCCAGGATATTCGTCTGgaa > 1:4891847/3‑64 (MQ=255) cTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGt < 1:6477598/71‑1 (MQ=255) gTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGtt > 1:3990473/1‑70 (MQ=255) ttCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGtt < 1:4767202/69‑1 (MQ=255) ttCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGtt < 1:2592400/69‑1 (MQ=255) ttCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGtt < 1:5563508/69‑1 (MQ=255) ttCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTa < 1:2806037/70‑1 (MQ=255) gcGCCGGCGCGCGCCGCTTCCACGGCCGCGTTCAGCGCCAGGATATTGGTCTGGAAGGc < 1:1307696/58‑1 (MQ=255) cGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAAt > 1:3594342/1‑70 (MQ=255) cGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAAt < 1:839837/70‑1 (MQ=255) agCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTGTGAAACGCAATATCGTTAAt > 1:4377635/2‑70 (MQ=255) gCCGGCGCGGGCCGCTTCCACGGCCGCGTTCAGCGCCAGGATATTGGTCTGGAAGGc < 1:4278239/57‑1 (MQ=255) gCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAAt < 1:1021023/69‑1 (MQ=255) ggCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCg < 1:193591/71‑1 (MQ=255) cACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAatat < 1:3339644/39‑1 (MQ=255) cACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAatat < 1:1486447/39‑1 (MQ=255) cgcgCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTg < 1:4211977/39‑1 (MQ=255) cgcgCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTg < 1:6407057/39‑1 (MQ=255) cgccgcTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTaa > 1:4019265/1‑71 (MQ=255) cgccgcTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTaa > 1:244163/1‑71 (MQ=255) gccgcTTCCACCGCCGCATTCAGGGCCAGAATATTGGt < 1:5768806/38‑1 (MQ=255) ccgcTTCCACCGCCGCATTGAGCGCCAGGATATTGGTCt > 1:173502/1‑39 (MQ=37) ccgcTTCCACCGCCGCATTGAGCGCCAGGATATTGGTCt > 1:3456985/1‑39 (MQ=37) ccgcTTCCACCGCCGCATTGAGCGCCAGGATATTGGTCt > 1:23447/1‑39 (MQ=37) ccgcTTCCACCGCCGCATTGAGCGCCAGGATATTGGTCt > 1:6907428/1‑39 (MQ=37) ccgcTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATg < 1:5128934/71‑1 (MQ=255) gcTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGt < 1:1408128/71‑1 (MQ=255) gcTTCCACAGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATg < 1:408206/69‑1 (MQ=255) gttCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGt < 1:34910/63‑1 (MQ=255) cTTCCACCGCCTCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGt < 1:5459991/64‑1 (MQ=255) cTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTa < 1:6135569/53‑1 (MQ=255) cTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGt < 1:5801164/64‑1 (MQ=255) cTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGt < 1:3442479/64‑1 (MQ=255) ttCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAg > 1:2693970/1‑57 (MQ=255) ccACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGcc > 1:2856835/1‑70 (MQ=255) ccACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGcc < 1:769034/70‑1 (MQ=255) cACCGCCGCATTCAGGGCCAGAATATTGGTCTGaa > 1:739857/1‑35 (MQ=255) cACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCaa > 1:6472506/1‑71 (MQ=255) cACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCaa > 1:2529885/1‑71 (MQ=255) cACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCaa > 1:4325989/1‑71 (MQ=255) ccgccgCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGaatt > 1:1506619/1‑56 (MQ=255) ccgccgCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAg > 1:4371635/1‑57 (MQ=255) ccgccgCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAg > 1:1421477/1‑57 (MQ=255) ccgccgCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGt > 1:1482263/1‑58 (MQ=255) ccgccgCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGt > 1:6637804/1‑58 (MQ=255) ccgccgCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGt > 1:2536457/1‑58 (MQ=255) ccgccgCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGt > 1:6197923/1‑58 (MQ=255) ccgccgCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGt > 1:4570626/1‑58 (MQ=255) ccgccgCATTCAGGGCAAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGt > 1:3811915/1‑58 (MQ=255) ccgccgCATTCAGGGACAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGt > 1:2356183/1‑58 (MQ=255) cgccgcATTTAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATgc > 1:6818078/1‑71 (MQ=255) cgccgcATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATgc < 1:6624147/71‑1 (MQ=255) gccgcATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTTATCAGCGAAGTAATGGTGCCAATgcg > 1:4505235/1‑71 (MQ=255) gccgcATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATgcg > 1:3347845/1‑71 (MQ=255) gccgcATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATgcg > 1:4104935/1‑71 (MQ=255) gccgcATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATgcg > 1:3367416/1‑71 (MQ=255) gccgcATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATgcg > 1:4746630/1‑71 (MQ=255) accgcATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCg > 1:2565390/2‑42 (MQ=255) ccgcATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGtt < 1:1995126/43‑1 (MQ=255) ccgcATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATgc < 1:5794913/69‑1 (MQ=255) ccgcATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATgc < 1:1219400/69‑1 (MQ=255) ttCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTggg > 1:3771667/1‑70 (MQ=255) tCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTgg > 1:540484/1‑68 (MQ=255) tCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTa > 1:5782599/1‑71 (MQ=255) tCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTa > 1:1164713/1‑71 (MQ=255) cAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGc > 1:3881056/1‑43 (MQ=255) cAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGc > 1:1298046/1‑43 (MQ=255) cAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGaa > 1:2298219/1‑46 (MQ=255) cAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTAc > 1:4002738/1‑71 (MQ=255) cAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTAc > 1:6563127/1‑71 (MQ=255) cAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTAc > 1:4980068/1‑71 (MQ=255) aGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTGATGGTGCCAATGCGCTGGGTACt > 1:1814521/1‑71 (MQ=255) aGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACt > 1:5068808/1‑71 (MQ=255) aGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACt > 1:5211301/1‑71 (MQ=255) aGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACt > 1:5073282/1‑71 (MQ=255) ggCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAAt > 1:2241292/1‑48 (MQ=255) ggCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAAt > 1:3791154/1‑48 (MQ=255) ggCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAAt > 1:2362436/1‑48 (MQ=255) ggCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAAt > 1:3121143/1‑48 (MQ=255) | TCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACT > minE/2068615‑2068751 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |