| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 1966484 = | 55 (1.130) | 5 (0.110) | 3/92 | NT | 9.1% | intergenic (‑91/+154) | cmtA/tktA | predicted fused mannitol‑specific enzyme IIBC component of PTS/transketolase 1, thiamin‑binding |
| ? | minE | 1966508 = | 49 (1.090) | intergenic (‑115/+130) | cmtA/tktA | predicted fused mannitol‑specific enzyme IIBC component of PTS/transketolase 1, thiamin‑binding | |||||
GGCGTGTTGTAGATCACAAATATTTATATGCAATAAATATCAATTATGTAATATGCATCACGATATGCGTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/1966556‑1966484‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tattACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCA > minE/1966508‑1966576 GGCGTGTTGTAGATCACAAATATTTATATGCAATAAATATCAATTATGTAATATGCATCACGATATGCGTA < 1:2880521/71‑1GGCGTGTTGTAGATCACAAATATTTATATGCAATAAATATCAATTATGTAATATGCATCACGATATGCGTA < 1:1442924/71‑1 CGTGTTGTAGATCACAAATATTTATATTCAATAAATATCAATTATGTAATATGCATCACGATATGCGTATT < 1:982614/71‑1 CGTGTTGTAGATCACAAATATTTATATGCAATAAATATCAATTATGTAATATGCATCACGATATGCGTATT < 1:2065596/71‑1 CGTGTTGTAGATCACAAATATTTATATGCAATAAATATCAATTATGTAATATGCATCACGATATGCGTATT < 1:895444/71‑1 GTGTTGTAGATCACAAATATTTATATGCAATAAATATCAATTATGTAATATGCATCACGATATGCGTATT > 1:1006188/1‑70 GTGTTGTAGATCACAAATATTTATATGCAATAAATATCAATTATGTAATATGCATCACGATATGCGTATT < 1:314523/70‑1 TAAATATCAATTATGTAATATGCATCACGATATGCGTATT > 1:1567381/1‑40 AATATCAATTATGTAATATGCATCACGATATGCGTA > 1:1499189/1‑36 AATATCAATTATGTAATATGCATCACGATATGCGTA > 1:666022/1‑36 AATATCAATTATGTAATATGCATCACGATATGCGTA > 1:1264235/1‑36 ATATGCATCACGATATGCGTATTACATAATTGATATTTA < 1:2306122/39‑1 ATATGCATCACGATATGCGTATTACATAATTGATATTTA < 1:373538/39‑1 TATGCATCACGATATGCGTATTACATAATTGATATTTATTGCATAT < 1:611730/46‑1 TATGCATCACGATATGCGTATTACATAATTGATATTTATTGCATAT < 1:547896/46‑1 GATATGCGTATTACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTG < 1:741727/71‑1 TATTACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACA > 1:2736820/1‑49 TATTACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACA > 1:2036696/1‑49 TATTACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACA > 1:1025844/1‑49 TTACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCA < 1:2357717/71‑1 TTACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGC > 1:610706/1‑70 TTACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGC > 1:2329030/1‑70 TACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCA > 1:319312/1‑70 TACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCA > 1:18360/1‑70 GGCGTGTTGTAGATCACAAATATTTATATGCAATAAATATCAATTATGTAATATGCATCACGATATGCGTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/1966556‑1966484‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tattACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCA > minE/1966508‑1966576 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |