| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 2540584 | 51 (1.040) | 5 (0.110) | 3/90 | NT | 8.1% | coding (75/699 nt) | rfaY | lipopolysaccharide core biosynthesis protein |
| ? | minE | = 2540601 | 68 (1.550) | coding (92/699 nt) | rfaY | lipopolysaccharide core biosynthesis protein | |||||
GATTCAGAAGAGCAAGATCAAAGACTTGGTTGTTTTTACCGATGAAAACAATTCAAAGTACCTCAATGTATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/2540512‑2540584‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tattaTAAGACAAGAAGTCATTTAATACATTGAGGTACTTTGAATTGTTTTCATCGGTAAAAACAACCAAGTC < minE/2540601‑2540534 GATTCAGAAGAGCAAGATCAAAGACTTGGTTGTTTTTACCGATGAAAACAATTCAAAGTACCTCAATGTAT > 1:1203539/1‑71 TTCAGAAGAGCAAGATCAAAGACTTGGTTGTTTTTACCGATGAAAACAATTCAAAGTACCTCAATGTAcat > 1:2969095/1‑68 TTCAGAAGAGCAAGATCAAAGACTTGGTTGTTTTTACCGATGAAAACAATTCAAAGTACCTCAATGTATTA < 1:2963187/71‑1 ATCAAAGACTTGGTTGTTTTTACCGATGAAAACAATTCAAAGTACCTCAATGTATTA < 1:1738618/57‑1 ATCAAAGACTTGGTTGTTTTTACCGATGAAAACAATTCAAAGTACCTCAATGTATTA < 1:322928/57‑1 GACTTGGTTGTTTTTACCGATGAAAACAATTCAAAGTACCTCAATGTATTA < 1:1630641/51‑1 GTTGTTTTTACCGATGAAAACAATTCAAAGTACCTCAATGTATTATAAGACAAGAAGTCATTT < 1:945876/63‑1 CGATGAAAACAATTCAAAGTACCTCAATGTATTATAAGACAAGAAGTCATTTAA < 1:379125/54‑1 CGATGAAAACAATTCAAAGTACCTCAATGTATTATAAGACAAGAAGTCATTTAA < 1:549064/54‑1 ATGAAAACAATTCAAAGTACCTCAATGTATTATAAGACAAGAAGTCATTTAATA > 1:2880981/1‑54 ATGAAAACAATTCAAAGTACCTCAATGTATTATAAGACAAGAAGTCATTTAATA > 1:862247/1‑54 TATTATAAGACAAGAAGTCATTTAATACATTGAGGTACTTTGAATTGTTTTCATCGGTAAAAACAACCA < 1:1384372/69‑1 TATTATAAGACAAGAAGTCATTTAATACATTGAGGTACTTTGAATTGTTTTCATCGGTAAAA < 1:1872247/62‑1 TTATAAGACAAGAAGTCATTTAATACATTGAGGTACTTTGAATTGTTTTCATCGGTAAAAACAACCAAGTC > 1:1553824/1‑71 ATAAGACAAGAAGTCATTTAATACGTTGAGGTACTTTGAATT > 1:2775889/1‑42 ATAAGACAAGAAGTCATTTAATACATTGAGGTACTTTGAATT > 1:647725/1‑42 GATTCAGAAGAGCAAGATCAAAGACTTGGTTGTTTTTACCGATGAAAACAATTCAAAGTACCTCAATGTATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/2540512‑2540584‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tattaTAAGACAAGAAGTCATTTAATACATTGAGGTACTTTGAATTGTTTTCATCGGTAAAAACAACCAAGTC < minE/2540601‑2540534 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |