Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 1,763,540 A→G 10.3% noncoding (304/1542 nt) rrsG ← 16S ribosomal RNA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE1,763,5400AG10.3% 157.8 / 10.0 58noncoding (304/1542 nt)rrsG16S ribosomal RNA
Reads supporting (aligned to +/- strand):  ref base A (22/30);  new base G (3/3);  total (25/33)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.67e-01

GGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGG  >  minE/1763502‑1763610
                                      |                                                                      
ggAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCGTCCTCTCAGACCAGCTACTGATCGTCGCCTTg                                        <  1:153424/71‑1 (MQ=11)
ggAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTg                                        >  1:1287326/1‑71 (MQ=32)
ggAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCCAGGGATCGTCGCCtt                                         <  1:2053499/70‑1 (MQ=14)
   gTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGt                                      >  1:245794/1‑70 (MQ=35)
      tGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTgg                                       >  1:2854884/1‑66 (MQ=35)
      tGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGc                                  >  1:2822562/1‑71 (MQ=34)
      tGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCCAGGGATCGTCGCCTTGGTGAGc                                  >  1:1542170/1‑71 (MQ=21)
        gACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGcc                                 <  1:36093/70‑1 (MQ=35)
        gACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGcc                                 <  1:1533134/70‑1 (MQ=35)
        gACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCCAGGGATCGTCGCCTTGGTGAg                                   <  1:54745/68‑1 (MQ=25)
         aCCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGt                               <  1:92239/71‑1 (MQ=34)
         aCCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGt                               <  1:2291173/71‑1 (MQ=34)
          ccGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGtt                              <  1:322810/71‑1 (MQ=34)
          ccGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGt                               >  1:725313/1‑70 (MQ=35)
          ccGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGt                               >  1:34137/1‑70 (MQ=35)
           cGTGTCTCAGTTCCAGTGTGGCTGGTCGTCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCTTTa                             >  1:2234487/1‑71 (MQ=11)
           cGTGTCTCAGTTCCAGTGTGGCTGGTCGTCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCTTTa                             >  1:2064553/1‑71 (MQ=11)
            gtgtCTCAGTTCCAGTGTGGCTGGTCGTCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCTTTAc                            >  1:2812637/1‑71 (MQ=11)
            gtgtCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGAACAGCCAGGGATCGTCGCCtt                                         >  1:612039/1‑58 (MQ=11)
              gtCTCAGTTCCAGTGTGGCTGGTCATCCTCTCATACCAGCCAGGGATCGTCGCCTTGGTGAGCCGTTAc                            <  1:629313/69‑1 (MQ=255)
              gtCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTAccc                          >  1:117713/1‑71 (MQ=34)
               tctcAGTTCCAGTGTGGCTGGTCGTCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCTTTAcctc                         <  1:1445443/71‑3 (MQ=11)
               tctcAGTTCCAGTGTGGCTGGTCGTCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCTTTAcctc                         <  1:2114044/71‑3 (MQ=11)
               tctcAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGt                               <  1:1206147/65‑1 (MQ=35)
               tctcAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTAccc                          <  1:2317573/70‑1 (MQ=35)
                 tcAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGcc                                 >  1:1441911/1‑61 (MQ=35)
                 tcAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGcc                                 >  1:2419411/1‑61 (MQ=35)
                 tcAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCCAGGGATCGTCGCCTTGGTGAGCCGTTACCccac                       >  1:1439129/1‑71 (MQ=21)
                   aGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCccacca                     <  1:805551/71‑1 (MQ=35)
                   aGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCccacca                     <  1:2998771/71‑1 (MQ=35)
                   aGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCccacc                      >  1:2588559/1‑70 (MQ=35)
                     ttCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACcaac                   <  1:1069538/71‑1 (MQ=39)
                      tCCAGTGTGGCTGGTCATCCTCTCAGACCAGCCAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACcaac                   >  1:553835/1‑70 (MQ=255)
                       ccAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGcc                                 >  1:567127/1‑55 (MQ=35)
                       ccAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGcc                                 >  1:1399471/1‑55 (MQ=35)
                       ccAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACcaaca                  <  1:2970047/70‑1 (MQ=255)
                       ccAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACcaaca                  <  1:1426133/70‑1 (MQ=255)
                       ccAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACcaac                   >  1:2829712/1‑69 (MQ=40)
                       ccAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACcaac                   >  1:708595/1‑69 (MQ=40)
                       ccAGTGTGGCGGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGcc                                 <  1:2338003/55‑1 (MQ=255)
                        cAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAg                <  1:2579144/71‑1 (MQ=255)
                        cAGTGTGGCTGGTCATCCTCCCAGACCAGCCAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACcaacaa                 <  1:1201307/70‑1 (MQ=255)
                         aGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAg                <  1:1998922/70‑1 (MQ=255)
                         aGTGTGGCTGGTCATCCTCTCAGACCAGCCAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACcaacaa                 <  1:2043415/69‑1 (MQ=255)
                            gtgGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTaa            >  1:2376979/1‑71 (MQ=255)
                            gtgGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGAGAGCCGTTACCCCACCAACAAGCTaa            >  1:857008/1‑71 (MQ=255)
                             tgGCTGGTCATCCTCTCAGACCAGCCAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTaa            <  1:972724/70‑1 (MQ=255)
                               gCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATcc         >  1:1797169/1‑71 (MQ=255)
                                cTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGt                                      <  1:996444/41‑1 (MQ=38)
                                cTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGt                                      <  1:2720448/41‑1 (MQ=38)
                                cTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATcc         >  1:2771500/1‑70 (MQ=255)
                                  ggTCATCCTCTCAGACCAGCCAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTaa            <  1:1307396/65‑1 (MQ=255)
                                   gTCATCCTCTCAGACCAGCTAGGGATCGTCGCCtt                                         <  1:517172/35‑1 (MQ=33)
                                   gTCATCCTCTCAGACCAGCTAGGGATCGTCGCCtt                                         <  1:2014764/35‑1 (MQ=33)
                                   gTCATCCTCTCAGACCAGCTAGGGATCGTCGCCtt                                         <  1:1603974/35‑1 (MQ=33)
                                   gTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATc     <  1:112475/71‑1 (MQ=255)
                                   gTCATCCTCTCAGACCAGCCAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCAt      <  1:766141/70‑1 (MQ=255)
                                   gTCATCCTCTCAGACCAGCCAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCAt      <  1:1798062/70‑1 (MQ=255)
                                      aTCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTgg  >  1:236996/1‑71 (MQ=255)
                                      |                                                                      
GGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGG  >  minE/1763502‑1763610

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: