| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,811,428 | T→C | 6.5% | M440V (ATG→GTG) | uvrA ← | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,811,428 | 0 | T | C | 6.5% | 236.8 / 5.5 | 77 | M440V (ATG→GTG) | uvrA | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC |
| Reads supporting (aligned to +/- strand): ref base T (31/41); new base C (2/3); total (33/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATCTCTTTAAGGATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGGCGCGCTT > minE/2811358‑2811496 | aTCTCTTTAAGGATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCAt > 1:1891030/1‑71 (MQ=255) ctctTTAAGGATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCg > 1:3307308/1‑71 (MQ=255) ctTTAAGGATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCa > 1:882344/1‑71 (MQ=255) tttAAGGATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGc < 1:685909/69‑1 (MQ=255) tttAAGGATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGATGAAGAATTCCAt < 1:2944883/66‑1 (MQ=255) tAAGGATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGa > 1:1851130/1‑71 (MQ=255) tAAGGATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGa > 1:1917939/1‑71 (MQ=255) tAAGGATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGa > 1:1379412/1‑71 (MQ=255) tAAGGATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGa > 1:2219764/1‑71 (MQ=255) aGGATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGAcc < 1:63811/71‑1 (MQ=255) aGGATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGAcc < 1:1773486/71‑1 (MQ=255) aTTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAAt > 1:2145061/1‑71 (MQ=255) aTTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAAt > 1:2780745/1‑71 (MQ=255) ttttttCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAAt > 1:893882/1‑70 (MQ=255) tttttCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGc > 1:533956/1‑71 (MQ=255) ttttCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCAt > 1:1376510/1‑61 (MQ=255) ttttCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCAt > 1:3247481/1‑61 (MQ=255) ttCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTc < 1:1297198/70‑1 (MQ=255) cAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCg > 1:3107703/1‑71 (MQ=255) aTCTTCGCCCTCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCACCGc < 1:2109415/50‑1 (MQ=255) aTCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCACCGc < 1:2703409/50‑1 (MQ=255) aTCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCACCGc < 1:967017/50‑1 (MQ=255) tCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCa < 1:441285/56‑1 (MQ=255) tCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCa < 1:859478/56‑1 (MQ=255) tCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCa < 1:2800873/56‑1 (MQ=255) tCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCg > 1:2903494/1‑68 (MQ=255) tCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGga < 1:3115977/70‑1 (MQ=255) cTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCACCGCAt > 1:1040068/1‑50 (MQ=255) cTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCACCGCAt > 1:383089/1‑50 (MQ=255) ttCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCAt > 1:3343953/1‑49 (MQ=255) ttCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCAt > 1:1746114/1‑49 (MQ=255) ttCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCAt > 1:633320/1‑49 (MQ=255) ttCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCAt > 1:1121376/1‑49 (MQ=255) cGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGAt < 1:5549/69‑1 (MQ=255) gCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAg < 1:813904/70‑1 (MQ=255) cGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGt > 1:292465/1‑58 (MQ=255) cTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCt < 1:1482402/51‑1 (MQ=255) cGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAgcggcg < 1:1121062/69‑1 (MQ=255) cGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTa > 1:3181053/1‑71 (MQ=255) cGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTa < 1:457800/71‑1 (MQ=255) gAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTAt < 1:129536/71‑1 (MQ=255) gAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTAt < 1:879098/71‑1 (MQ=255) tttGAGATTGTTGTAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAg < 1:3298624/53‑1 (MQ=255) tttGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAg < 1:271275/53‑1 (MQ=255) tttGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAg < 1:2917246/53‑1 (MQ=255) tttGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAg < 1:980975/53‑1 (MQ=255) tttGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAg < 1:2349956/53‑1 (MQ=255) tttGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATtc < 1:1154599/70‑1 (MQ=255) tttGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATtc < 1:2943274/70‑1 (MQ=255) tttGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATtc < 1:785950/70‑1 (MQ=255) tttGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATtc < 1:552327/70‑1 (MQ=255) tttGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATtc < 1:3153539/70‑1 (MQ=255) tGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAgca > 1:3140703/1‑53 (MQ=255) tGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAgc > 1:1644694/1‑52 (MQ=255) tGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATtctc > 1:1642310/1‑70 (MQ=255) gagaTTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAgcggcg < 1:3303199/62‑1 (MQ=255) gagaTTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAgcggcg < 1:2762894/62‑1 (MQ=255) gagaTTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCg < 1:2854434/70‑1 (MQ=255) gaTTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACa > 1:1317138/1‑71 (MQ=255) gaTTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACa > 1:3117261/1‑71 (MQ=255) aTTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGAc < 1:3160754/69‑1 (MQ=255) aTTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGAc < 1:1313220/69‑1 (MQ=255) ttgttgAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGAc < 1:3300427/68‑1 (MQ=255) ttgAAGAATTCCATCGCATGACCAATGCTCATGTCg < 1:245128/36‑1 (MQ=255) gaagaaTTCCATCGCATGACCAATGCTCATGTCGga > 1:1171384/1‑36 (MQ=255) gaagaaTTCCATCGCATGACCAATGCTCATGTCGga > 1:540873/1‑36 (MQ=255) gaagaaTTCCATCGCATGACCAATGCTCATGTCGga > 1:620628/1‑36 (MQ=255) gaagaaTTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACg < 1:494946/70‑1 (MQ=255) gaagaaTTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACg < 1:1565894/70‑1 (MQ=255) gaagaaTTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGt > 1:19413/1‑71 (MQ=255) gaagaaTTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGt > 1:3095713/1‑71 (MQ=255) aagaaTTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGTGTATTCTCGACATACACg < 1:2361680/69‑1 (MQ=255) aagaaTTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACg < 1:3436404/69‑1 (MQ=255) aagaaTTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTg < 1:2348745/71‑1 (MQ=255) aagaaTTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTg < 1:1017511/71‑1 (MQ=255) ttCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATtctc < 1:1638940/54‑1 (MQ=255) ttCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATtctc < 1:986398/54‑1 (MQ=255) tCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGgcgcgc > 1:2819098/1‑71 (MQ=255) cATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGGCGCGCtt < 1:1271277/71‑1 (MQ=255) tCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACa < 1:860460/53‑1 (MQ=255) | ATCTCTTTAAGGATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGGCGCGCTT > minE/2811358‑2811496 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |