Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 4,371,273 Δ2 bp 100% intergenic (‑6/+299) dcuA ← / ← aspA C4‑dicarboxylate antiporter/aspartate ammonia‑lyase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb4,371,2730A.100.0% 137.6 / NA 36intergenic (‑6/+300)dcuA/aspAC4‑dicarboxylate antiporter/aspartate ammonia‑lyase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (14/22);  total (14/22)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.
*W3110S.gb4,371,2740A.100.0% 137.6 / NA 36intergenic (‑7/+299)dcuA/aspAC4‑dicarboxylate antiporter/aspartate ammonia‑lyase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (14/22);  total (14/22)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

GGGTTACGGCGCAGCAGCTTTTCTGTCTGATGAACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAGAAAAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGAACGGGATGTTACCGGGTTT  >  W3110S.gb/4371203‑4371335
                                                                      ||                                                             
gggTTACGGCGCAGCAGCTTTTCTGTCTGATGAACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAGa                                                                <  1:1859156/71‑1 (MQ=255)
gggTTACGGCGCAGCAGCTTTTCTGTCTGATGAACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAGa                                                                <  1:639780/71‑1 (MQ=255)
  gTTACGGCGCAGCAGCTTTTCTGTCTGATGAACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAGaa                                                               <  1:2861464/70‑1 (MQ=255)
   ttACGGCGCAGCAGCTTTTCTGTCTGATGCACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAGaaa                                                              >  1:1402720/1‑70 (MQ=255)
    tACGGCGCAGCAGCTTTTCTGTCTGATGAACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAGaaa                                                              >  1:1115958/1‑69 (MQ=255)
     aCGGCGCAGCAGCTTTTCTGTCTGATGAACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAGaaatag                                                           >  1:2022738/1‑68 (MQ=255)
              cagcTTTTCTGTCTGATGAACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAGaaatag                                                           >  1:209797/1‑59 (MQ=255)
                      ctgtctgATGAACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCAt                                         >  1:70683/1‑70 (MQ=255)
                      ctgtctgATGAACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCAt                                         <  1:1490393/70‑1 (MQ=255)
                      ctgtctgATGAACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCAt                                         <  1:1567148/70‑1 (MQ=255)
                         tctgATGAACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATa                                     <  1:826194/71‑1 (MQ=255)
                            gatgaACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCAt                                         <  1:2720796/64‑1 (MQ=255)
                            gatgaACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCAt                                         <  1:2725271/64‑1 (MQ=255)
                             atgaACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAGaaa                                                              >  1:2301304/1‑44 (MQ=255)
                             atgaACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAGaaa                                                              >  1:401386/1‑44 (MQ=255)
                             atgaACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGc                                            >  1:2839419/1‑60 (MQ=255)
                             atgaACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATaa                                    <  1:1531479/68‑1 (MQ=255)
                             atgaACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATg                                  >  1:1643604/1‑70 (MQ=255)
                              tgaACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGga                                <  1:2137878/71‑1 (MQ=255)
                              tgaACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGga                                <  1:891301/71‑1 (MQ=255)
                               gaACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATg                                  >  1:3592936/1‑68 (MQ=255)
                                 aCCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGgag                               <  1:1135085/69‑1 (MQ=255)
                                 aCCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGAt                             <  1:2924765/71‑1 (MQ=255)
                                 aCCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGAt                             <  1:158193/71‑1 (MQ=255)
                                 aCCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGAt                             <  1:2301384/71‑1 (MQ=255)
                                  ccAGATAGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAAt                                   >  1:1344754/1‑64 (MQ=255)
                                     gATAGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGgaga                              >  1:1616178/1‑66 (MQ=255)
                                        aGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATaa                                    >  1:1530191/1‑57 (MQ=255)
                                         gTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATAACATCg                      <  1:150620/70‑1 (MQ=255)
                                          tCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGAt                                      <  1:534219/53‑1 (MQ=255)
                                          tCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGga                                <  1:993090/59‑1 (MQ=255)
                                            cAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATa                                                 >  1:1167188/1‑40 (MQ=37)
                                              gACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGaa                    >  1:2667815/1‑67 (MQ=255)
                                              gACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGAACggg                <  1:354904/71‑1 (MQ=255)
                                              gACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGAACggg                <  1:621616/71‑1 (MQ=255)
                                                ccGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGAACGGGAt              <  1:2968328/71‑1 (MQ=255)
                                                ccGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATAACATCGAACGGGAt              >  1:3556968/1‑71 (MQ=255)
                                                   ccAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGa                           <  1:1138382/55‑1 (MQ=38)
                                                    cAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGAt                             <  1:1599350/52‑1 (MQ=38)
                                                      gCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATaa                                    >  1:168583/1‑43 (MQ=37)
                                                      gCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGa                           >  1:1807603/1‑52 (MQ=255)
                                                         aCCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGAACGGGATGTTACCggg     <  1:1284938/71‑1 (MQ=255)
                                                             gCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATaa                                    >  1:1742489/1‑36 (MQ=25)
                                                             gCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATaa                                    >  1:1091690/1‑36 (MQ=25)
                                                              cATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGAACGGGATGTTACCGGGttt  <  1:1087520/69‑1 (MQ=255)
                                                                      ||                                                             
GGGTTACGGCGCAGCAGCTTTTCTGTCTGATGAACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAGAAAAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGAACGGGATGTTACCGGGTTT  >  W3110S.gb/4371203‑4371335

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: