New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb = 7126547 (1.230)253 (9.240)
+AGGGTCCCTAAGTC
67/70 NT 92.6% coding (879/879 nt) araC DNA‑binding transcriptional dual regulator
?W3110S.gb 3464879 = 10 (0.260)intergenic (‑255/+46) murB/rrfB UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA

Only 100 of 435 total aligned reads displayed.

GGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/71196‑71265
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGC  >  W3110S.gb/3464879‑3464928
                                                                      ||||||||||||||                                                  
GGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAA                                                                 <  1:905929/71‑1
 GCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAA                                                                 <  1:646702/70‑1
    AGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGT                                                             <  1:3511289/71‑1
      CCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCC                                                           >  1:2858912/1‑71
      CCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCC                                                           >  1:2608128/1‑71
       CCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCC                                                          >  1:1529847/1‑71
       CCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAA                                                                 >  1:3139411/1‑64
        CGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCT                                                         <  1:2292589/71‑1
        CGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCT                                                         <  1:3594668/71‑1
        CGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCT                                                         <  1:339162/71‑1
        CGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCT                                                         <  1:323438/71‑1
        CGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCT                                                         <  1:2769012/71‑1
        CGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCT                                                         <  1:1925915/71‑1
        CGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCC                                                          >  1:1222367/1‑70
         GAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCac                                                          >  1:2447732/1‑67
          AGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAA                                                       <  1:2049030/71‑1
           GCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAG                                                      >  1:856828/1‑71
           GCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAG                                                      >  1:720634/1‑71
               GTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCT                                                   >  1:1593492/1‑70
               GTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGT                                                     >  1:2727669/1‑68
                ttcCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAA                                                 <  1:2977383/68‑1
                ttcCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTA                                                  >  1:3553748/4‑70
                 tcCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCC                                                           >  1:3442856/3‑60
                 tcCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAA                                                                 >  1:2169637/3‑54
                  cCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAA                                                <  1:527524/69‑1
                  cCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCC                                                           >  1:2824173/2‑59
                    GTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACG                                             <  1:1868213/71‑1
                    GTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACG                                             <  1:169095/71‑1
                     TGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA                                            <  1:118748/71‑1
                     TGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA                                            <  1:2796561/71‑1
                     TGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA                                            <  1:699378/71‑1
                     TGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA                                            <  1:3330214/71‑1
                     TGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA                                            <  1:593168/71‑1
                     TGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAA                                                       <  1:2998350/60‑1
                      GCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA                                            >  1:1819139/1‑70
                      GCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA                                            >  1:957257/1‑70
                      GCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGT                                                     >  1:1489596/1‑61
                       CCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA                                            >  1:774299/1‑69
                          GTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACG                                             <  1:2502363/65‑1
                           TTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAA                                                       <  1:2327460/54‑1
                           TTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGT                                                             <  1:1424140/48‑1
                           TTGTGAAGAAAAAGTGAATGATGTAGCCTCAAGTTGTCATAAAGG                                                               <  1:2222349/45‑1
                            TGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAA                                               >  1:399812/1‑61
                            TGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAA                                                                 >  1:1984430/1‑43
                              TGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAG                                   <  1:1550978/71‑1
                              TGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCA                                    <  1:3295685/70‑1
                               GAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGT                                  >  1:2375281/1‑71
                                AAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTC                                 >  1:273851/1‑71
                                AAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTC                                 >  1:1086455/1‑71
                                AAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAA                                          >  1:1653989/1‑62
                                AAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAA                                                       >  1:3505477/1‑49
                                AAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAA                                                       >  1:1392468/1‑49
                                 AGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAA                                                       >  1:1833902/1‑48
                                   AAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA                                            <  1:1907545/57‑1
                                    AAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTC                             <  1:3108571/71‑1
                                    AAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGG                                                               >  1:506408/1‑37
                                     AAAGTGAATGATGTCGCCGTCAAGTTGTCATAAAGGGTC                                                            >  1:475299/1‑39
                                     AAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCG                            <  1:445340/71‑1
                                     AAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAA                                          >  1:287233/1‑57
                                     AAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAA                                          >  1:209896/1‑57
                                     AAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCT                                                         <  1:804118/42‑1
                                     AAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGG                                                              >  1:3161309/1‑37
                                      AAGTGAATGATGTAGCCGTCAAGTTGTCATACAGGGTCCCTAAGTCTAAAACGA                                            <  1:3278384/54‑1
                                        GTGATTGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAAC                                              <  1:625910/50‑1
                                        GTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACT                         <  1:2928807/71‑1
                                          GAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGG                                        >  1:2077798/1‑54
                                            ATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGC                     <  1:1007430/71‑1
                                             TGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCG                            <  1:1710687/63‑1
                                             TGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACG                                             <  1:1344942/46‑1
                                                TGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGA                       >  1:2401431/1‑65
                                                 GTAGCCGTCAAGTTGTCATAAAGGGTGCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGA                           <  1:1114576/60‑1
                                                  TAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCG               >  1:3478991/1‑71
                                                  TAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTC                <  1:3025970/70‑1
                                                    GCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGAC                          >  1:1267613/1‑58
                                                      CGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGA                           >  1:1739114/1‑55
                                                       GTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA                                            <  1:1031546/37‑1
                                                        ttAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAT         <  1:1799592/69‑1
                                                        TCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAT         <  1:3682306/71‑1
                                                        TCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAG                                   <  1:874580/45‑1
                                                        TCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA                                            <  1:1610262/36‑1
                                                        TCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA                                            <  1:745498/36‑1
                                                        TCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA                                            <  1:1301521/36‑1
                                                         CAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTC                                 >  1:195266/1‑46
                                                          AAGTTGTCATAAAGGGTCCCTAAGTCTATAACGAAAGG                                        <  1:2541852/38‑1
                                                          AAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTT       >  1:3064501/1‑71
                                                          AAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTT       >  1:1759666/1‑71
                                                          AAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAA                                           >  1:2682026/1‑35
                                                            GTTGTCATAAAGGGTCACTAAGTCTAAAACGAAAGGCCCAGTCT                                <  1:211311/44‑1
                                                             TTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTA          >  1:370607/1‑65
                                                              TGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGAcc   >  1:114753/1‑69
                                                               GTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGAccg  >  1:3200663/1‑68
                                                                TCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGAccg  <  1:3641125/70‑4
                                                                 CATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAG                                   <  1:2004999/36‑1
                                                                  ATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGAC                          >  1:661668/1‑44
                                                                  ATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCG                            <  1:3068469/42‑1
                                                                    AAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGA                       >  1:366003/1‑45
                                                                     AAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAG                      >  1:3180698/1‑45
                                                                          TCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTT       <  1:2209875/55‑1
                                                                            CCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGA                       >  1:419996/1‑37
                                                                              TAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTT            <  1:974720/46‑1
                                                                      ||||||||||||||                                                  
GGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/71196‑71265
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGC  >  W3110S.gb/3464879‑3464928

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.