| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 71265 | 47 (1.230) | 253 (9.240) +AGGGTCCCTAAGTC |
67/70 | NT | 92.6% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 3464879 = | 10 (0.260) | intergenic (‑255/+46) | murB/rrfB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA | |||||
Only 100 of 435 total aligned reads displayed.
GGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/71196‑71265‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGC > W3110S.gb/3464879‑3464928 |||||||||||||| GGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAA < 1:905929/71‑1 GCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAA < 1:646702/70‑1 AGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGT < 1:3511289/71‑1 CCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCC > 1:2858912/1‑71 CCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCC > 1:2608128/1‑71 CCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCC > 1:1529847/1‑71 CCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAA > 1:3139411/1‑64 CGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCT < 1:2292589/71‑1 CGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCT < 1:3594668/71‑1 CGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCT < 1:339162/71‑1 CGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCT < 1:323438/71‑1 CGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCT < 1:2769012/71‑1 CGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCT < 1:1925915/71‑1 CGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCC > 1:1222367/1‑70 GAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCac > 1:2447732/1‑67 AGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAA < 1:2049030/71‑1 GCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAG > 1:856828/1‑71 GCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAG > 1:720634/1‑71 GTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCT > 1:1593492/1‑70 GTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGT > 1:2727669/1‑68 ttcCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAA < 1:2977383/68‑1 ttcCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTA > 1:3553748/4‑70 tcCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCC > 1:3442856/3‑60 tcCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAA > 1:2169637/3‑54 cCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAA < 1:527524/69‑1 cCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCC > 1:2824173/2‑59 GTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACG < 1:1868213/71‑1 GTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACG < 1:169095/71‑1 TGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA < 1:118748/71‑1 TGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA < 1:2796561/71‑1 TGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA < 1:699378/71‑1 TGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA < 1:3330214/71‑1 TGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA < 1:593168/71‑1 TGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAA < 1:2998350/60‑1 GCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA > 1:1819139/1‑70 GCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA > 1:957257/1‑70 GCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGT > 1:1489596/1‑61 CCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA > 1:774299/1‑69 GTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACG < 1:2502363/65‑1 TTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAA < 1:2327460/54‑1 TTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGT < 1:1424140/48‑1 TTGTGAAGAAAAAGTGAATGATGTAGCC‑TCAAGTTGTCATAAAGG < 1:2222349/45‑1 TGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAA > 1:399812/1‑61 TGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAA > 1:1984430/1‑43 TGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAG < 1:1550978/71‑1 TGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCA < 1:3295685/70‑1 GAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGT > 1:2375281/1‑71 AAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTC > 1:273851/1‑71 AAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTC > 1:1086455/1‑71 AAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAA > 1:1653989/1‑62 AAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAA > 1:3505477/1‑49 AAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAA > 1:1392468/1‑49 AGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAA > 1:1833902/1‑48 AAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA < 1:1907545/57‑1 AAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTC < 1:3108571/71‑1 AAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGG > 1:506408/1‑37 AAAGTGAATGATGTCGCCGTCAAGTTGTCATAAAGGGTC > 1:475299/1‑39 AAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCG < 1:445340/71‑1 AAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAA > 1:287233/1‑57 AAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAA > 1:209896/1‑57 AAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCT < 1:804118/42‑1 AAAGTGAATGATGTAGCCGTCAAGTTGTCATAAAGGG > 1:3161309/1‑37 AAGTGAATGATGTAGCCGTCAAGTTGTCATACAGGGTCCCTAAGTCTAAAACGA < 1:3278384/54‑1 GTGATTGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAAC < 1:625910/50‑1 GTGAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACT < 1:2928807/71‑1 GAATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGG > 1:2077798/1‑54 ATGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGC < 1:1007430/71‑1 TGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCG < 1:1710687/63‑1 TGATGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACG < 1:1344942/46‑1 TGTAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGA > 1:2401431/1‑65 GTAGCCGTCAAGTTGTCATAAAGGGTGCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGA < 1:1114576/60‑1 TAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCG > 1:3478991/1‑71 TAGCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTC < 1:3025970/70‑1 GCCGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGAC > 1:1267613/1‑58 CGTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGA > 1:1739114/1‑55 GTCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA < 1:1031546/37‑1 ttAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAT < 1:1799592/69‑1 TCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAT < 1:3682306/71‑1 TCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAG < 1:874580/45‑1 TCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA < 1:1610262/36‑1 TCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA < 1:745498/36‑1 TCAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGA < 1:1301521/36‑1 CAAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTC > 1:195266/1‑46 AAGTTGTCATAAAGGGTCCCTAAGTCTATAACGAAAGG < 1:2541852/38‑1 AAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTT > 1:3064501/1‑71 AAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTT > 1:1759666/1‑71 AAGTTGTCATAAAGGGTCCCTAAGTCTAAAACGAA > 1:2682026/1‑35 GTTGTCATAAAGGGTCACTAAGTCTAAAACGAAAGGCCCAGTCT < 1:211311/44‑1 TTGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTA > 1:370607/1‑65 TGTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGAcc > 1:114753/1‑69 GTCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGAccg > 1:3200663/1‑68 TCATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGAccg < 1:3641125/70‑4 CATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAG < 1:2004999/36‑1 ATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGAC > 1:661668/1‑44 ATAAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCG < 1:3068469/42‑1 AAAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGA > 1:366003/1‑45 AAGGGTCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAG > 1:3180698/1‑45 TCCCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTT < 1:2209875/55‑1 CCTAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGA > 1:419996/1‑37 TAAGTCTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTT < 1:974720/46‑1 |||||||||||||| GGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/71196‑71265‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGC > W3110S.gb/3464879‑3464928 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |