| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | W3110S.gb | 2,176,983 | Δ1,199 bp | 100% | [gatA]–[gatA] | [gatA], insH, [gatA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | W3110S.gb | 2176983–2178179 | 2178181 | 3–1199 | 48 [0] | [0] 46 | [gatA]–[gatA] | [gatA],insH,[gatA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2176982 | 0 (0.000) | 37 (1.070) | 28/88 | NT | 100% | coding (71/321 nt) | gatA | galactitol‑specific enzyme IIA component of PTS |
| ? | W3110S.gb | 2178182 = | 0 (0.000) | coding (202/315 nt) | gatA | galactitol‑specific enzyme IIA component of PTS | |||||
TCGTTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2176910‑2176982‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATT > W3110S.gb/2178182‑2178247 TCGTTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTT < 1:2835606/71‑1 GTTATCATCATCCGCTTGTTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAG > 1:1865176/1‑71 GTTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAG > 1:3144132/1‑71 TATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCA > 1:1112096/1‑71 TCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCAT < 1:3531690/70‑1 CATCCTCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATC > 1:3174086/1‑71 ATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCG > 1:1430855/1‑71 ATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATC < 1:2983602/70‑1 GCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAA > 1:157652/1‑71 GCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAA > 1:1157078/1‑71 GCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACA < 1:1843845/70‑1 GAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGC > 1:1377064/1‑52 AAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCG > 1:2533072/1‑71 AAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATG < 1:3325638/69‑1 AATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGT < 1:2452426/71‑1 TGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTAT > 1:3530787/1‑71 GAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAAT > 1:3230457/1‑52 AACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCG > 1:418977/1‑65 ACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTG > 1:1111694/1‑70 ACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTG > 1:237219/1‑70 CTTTATTTGTTGGCATTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGC > 1:916922/1‑70 TTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATG < 1:3465135/60‑1 TATTTGTTGGCCTTAACAGATAAATGGCTGACGAC > 1:2990675/1‑35 ATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATA < 1:3048684/70‑1 ATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATA < 1:1629014/70‑1 TTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGC > 1:3119635/1‑71 TTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCC < 1:502928/44‑1 CTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTC < 1:3530375/71‑1 TTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCA < 1:66763/56‑1 TTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCG < 1:3444890/48‑1 AACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTG > 1:3593445/1‑65 AACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTG > 1:1539883/1‑65 AACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATG > 1:104674/1‑44 ACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGT > 1:1847165/1‑60 ACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCAC < 1:3478712/39‑1 GATAAATGGCTGACGACTTAGCATTAATCGCCTCAC < 1:1058551/36‑1 GATAAATGGCTGACGACTTAGCATGAATCGCCTCAC < 1:3455568/36‑1 TAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTA > 1:950352/1‑43 AAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGC > 1:3637461/1‑52 AAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGC > 1:1610796/1‑52 ATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCC > 1:1676303/1‑71 TGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGC < 1:3662785/43‑1 GCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGT < 1:2355377/71‑1 CTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAA > 1:1984913/1‑42 GACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCG < 1:3312223/66‑1 ACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGC > 1:2713385/1‑43 GACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAA < 1:814116/71‑1 ACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAAT < 1:3217237/71‑1 CTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATT < 1:342260/71‑1 TTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGT < 1:2033222/62‑1 TCGTTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2176910‑2176982‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATT > W3110S.gb/2178182‑2178247 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |