| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | W3110S.gb | 2,320,795 | Δ1,336 bp | 100% | insD–[rcsC] | insD, insC, [rcsC] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | W3110S.gb | 2320795–2322125 | 2322130 | 6–1336 | 56 [0] | [0] 58 | insD–[rcsC] | insD,insC,[rcsC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2320794 | 0 (0.000) | 43 (1.280) | 27/86 | NT | 100% | intergenic (‑59/+11) | rcsC/insD | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN/IS2 element protein |
| ? | W3110S.gb | 2322131 = | 0 (0.000) | coding (2368/2424 nt) | rcsC | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN | |||||
TCCACGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2320719‑2320794‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTG > W3110S.gb/2322131‑2322200 TCCACGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGG < 1:3103714/71‑1 CCACGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGA > 1:1305013/1‑71 CACGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGAT > 1:776484/1‑71 CACGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGAT > 1:3148206/1‑71 CACGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGAT > 1:188240/1‑71 ACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTC < 1:698005/71‑1 GAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCG < 1:2798774/65‑1 GAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCG < 1:3504882/65‑1 ATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCAT < 1:1111045/71‑1 ATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCAT < 1:3452686/71‑1 TCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATC < 1:3637621/58‑1 CATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGGAGAGCGTTAGCAGGATCGTCGCTCTCCATCT > 1:3502575/1‑71 gTATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATC > 1:3082255/2‑56 ATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTC > 1:262357/1‑71 ATATCGTCATTATAGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATC > 1:1623434/1‑56 GTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCA < 1:1253401/71‑1 GTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATC > 1:1608635/1‑70 GTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATC > 1:2592033/1‑70 GTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATC > 1:3246416/1‑70 TCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCT < 1:715526/58‑1 ATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAA < 1:3336968/70‑1 TTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATA < 1:1098052/71‑1 TATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATA > 1:3673797/1‑70 TATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAA > 1:144125/1‑68 ATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAA > 1:2369142/1‑71 ATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAA > 1:2565532/1‑71 ATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATAA > 1:974057/1‑70 TCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAA < 1:2193599/70‑1 TCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAA < 1:1357285/70‑1 TCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAA < 1:3059913/70‑1 TCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAA < 1:101388/70‑1 TCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATAGTCGCTCTCCATCTCGATCAAATAAA > 1:322465/1‑70 GCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTATCAGGATCGTCGCTCTCCATCTCGATCAAATAAATA < 1:2816460/70‑1 GCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAATAC < 1:1867923/71‑1 ACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATC > 1:393094/1‑57 CCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAATA > 1:1252691/1‑65 CGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCA < 1:1181542/71‑1 CTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAAC < 1:2382889/71‑1 CTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAAC < 1:3303037/71‑1 CTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAAC < 1:140842/71‑1 TGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAAC < 1:3131563/68‑1 TGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAA > 1:1054848/1‑67 TCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGC < 1:247330/71‑1 TCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATG < 1:3697133/70‑1 TCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCAT > 1:301223/1‑41 TCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCAT > 1:248841/1‑41 CGTTGACGGCAGAGCGTTAGCAGGATCGTCTCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCC < 1:1694116/70‑1 CAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCAT > 1:2759108/1‑71 AGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATA < 1:333503/41‑1 AGAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATA < 1:2766507/41‑1 GAGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCATCAAT < 1:3570643/56‑1 AGCGTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAAC < 1:780227/52‑1 GTTAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACA < 1:448452/50‑1 TTAGCAGGATCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGC < 1:3105056/71‑1 AGCAGGATCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCA < 1:850396/70‑1 AGCAGGATCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAG > 1:3548483/1‑68 CAGGATCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGC < 1:8109/70‑1 CAGGATCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAAC < 1:2822634/44‑1 GATCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAAC < 1:147067/41‑1 TCGTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTA > 1:251544/1‑49 TCGTCGCTCTCCATCTCGATCAAAAAAATACGCGCCAACAATGCCGGTAGCTCA > 1:543276/1‑54 TCGTCGCTCTCCATCTAGATCAAATAAATACGCGCCAACAATGCCGGTA > 1:693158/1‑49 GTCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTG < 1:1947122/70‑1 TCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTG < 1:1327054/71‑1 TCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTG < 1:1425683/71‑1 TCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCG < 1:1790213/55‑1 TCCACGACCAGAATCATCATATCGTCATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2320719‑2320794‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatcgtCGCTCTCCATCTCGATCAAATAAATACGCGCCAACAATGCCGGTAGCTCATGCGGAGCAGCCACACTGTG > W3110S.gb/2322131‑2322200 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |