New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb = 2412225NA (NA)58 (1.510) 36/98 NT 96.7% intergenic (‑55/‑782) insA/yfbQ IS1 element protein/predicted aminotransferase
?W3110S.gb = 3748807 2 (0.050)coding (176/984 nt) tnaB tryptophan transporter of low affinity

AGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/2412156‑2412225
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGG  <  W3110S.gb/3748807‑3748738
                                                                                                                                            
AGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                                                       >  1:2936131/1‑71
 GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTG                                                                      >  1:3408765/1‑71
 GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTG                                                                      >  1:3491803/1‑71
 GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTG                                                                      >  1:351076/1‑71
 GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                                                       <  1:1196776/70‑1
 GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                                                       <  1:1627184/70‑1
 GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                                                       <  1:2357490/70‑1
 GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                                                       <  1:1271547/70‑1
   AACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTT                                                                    <  1:3019360/71‑1
    ACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACATTAAATCAGTAAGTTGGCAGCATCACCTGTTA                                                                   >  1:360929/1‑71
    ACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTA                                                                   >  1:101402/1‑71
        AAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAG                                                               <  1:2327879/71‑1
        AAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAG                                                               <  1:1747754/71‑1
        AAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAG                                                               <  1:3124308/71‑1
        AAGCCACTGGAGCACCTCAAAAACACCAACATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAG                                                               <  1:1164379/71‑1
         AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAG                                                               <  1:2531531/70‑1
             ACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAA                                                             >  1:1518803/1‑68
              CTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTCGGCAGCATCACCT                                                                       <  1:1271973/57‑1
               TGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                                                       >  1:3009043/1‑56
                GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAG                                                               <  1:195225/63‑1
                GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTA                                                                   >  1:736624/1‑59
                GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTA                                                                   >  1:3056821/1‑59
                GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGT                                                                     >  1:1595924/1‑57
                GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGT                                                                     >  1:1200054/1‑57
                 GAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAA                                                        <  1:2442805/69‑1
                   GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAA                                                         <  1:1290065/66‑1
                      CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAAT                                                 <  1:587692/71‑1
                       CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATT                                                <  1:2983084/71‑1
                       CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAAT                                                 <  1:2928249/70‑1
                       CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTT                                                     <  1:367299/66‑1
                        TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTA                                               >  1:2382317/1‑71
                        TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAA                                                        <  1:2347054/62‑1
                        TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGT                                                                     <  1:2003250/49‑1
                        TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGT                                                                     <  1:2716871/49‑1
                        TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT                                                                       <  1:1637804/47‑1
                         CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTAT                                              >  1:3488977/1‑71
                         CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTAT                                              >  1:1455377/1‑71
                         CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAAT                                                 >  1:734952/1‑68
                         CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTA                                                                   >  1:1452625/1‑50
                          AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATC                                             >  1:1354815/1‑71
                          AAAAAAACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTG                                                                      >  1:2891475/1‑46
                           AAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTA                                                                   >  1:2424611/1‑48
                             AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAA                                                   >  1:2602076/1‑62
                                   ATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCT                                    >  1:1926303/1‑71
                                    TCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTC                                   >  1:880351/1‑71
                                    TCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCC                                           <  1:1203406/63‑1
                                    TCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTA                                                                <  1:1894719/42‑1
                                     CATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAA                                                   <  1:3206982/54‑1
                                      ATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTC                                   >  1:315310/1‑69
                                      ATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTC                                   >  1:1216102/1‑69
                                      ATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTA                                                                >  1:3346735/1‑40
                                       TACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCG                                          <  1:479879/61‑1
                                         CACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGT                                         >  1:822749/1‑60
                                         CACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATC                                             <  1:1104175/56‑1
                                         CACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCA                                                          <  1:1598488/43‑1
                                         CACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAA                                                             >  1:1997634/1‑40
                                           CTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTT                            <  1:3314734/71‑1
                                            TAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTC                                        <  1:2085175/58‑1
                                            TAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATT                                                >  1:2187803/1‑50
                                            TAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAA                                                   <  1:1455027/47‑1
                                            TAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAA                                                   <  1:2507577/47‑1
                                              AATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAAC                         <  1:1963874/71‑1
                                              AATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAA                          >  1:2051574/1‑70
                                              AATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTA                           <  1:2366286/69‑1
                                              AATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTA                           <  1:2237671/69‑1
                                              AATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTA                           <  1:2036322/69‑1
                                               ATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTA                                                    <  1:3618706/43‑1
                                               ATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCA                                                          <  1:121495/37‑1
                                                TCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCC                                           <  1:1449914/51‑1
                                                TCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCC                                           <  1:2390473/51‑1
                                                  AGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTC                                        >  1:219843/1‑52
                                                    TAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTC                                        <  1:3587999/50‑1
                                                      AGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCAC                 >  1:590181/1‑71
                                                        TTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCA               <  1:2957195/71‑1
                                                        TTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAAT                                                 <  1:1859452/37‑1
                                                         TGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGG                                      >  1:56690/1‑47
                                                          GGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCA               >  1:1478880/1‑69
                                                            CAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCG                                          <  1:214501/40‑1
                                                              GCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCG                                          >  1:1701482/1‑38
                                                                ATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTA       <  1:1211888/71‑1
                                                                ATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCG                                       >  1:3040610/1‑39
                                                                  CACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAAT     >  1:2610894/1‑71
                                                                   ACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATC    >  1:3387803/1‑71
                                                                   ACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATC    <  1:2614351/71‑1
                                                                     CTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGG  <  1:546998/71‑1
                                                                     CTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGG  >  1:3180557/1‑71
                                                                     CTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGG  >  1:1673846/1‑71
                                                                     CTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTT                            <  1:2715225/45‑1
                                                                                                                                            
AGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/2412156‑2412225
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGG  <  W3110S.gb/3748807‑3748738

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.