New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	2772255 =	67 (1.750)	3 (0.090)	3/90	NT	5.4%	coding (282/1704 nt)	yfjW	predicted inner membrane protein
	?	W3110S.gb	2772277 =	43 (1.220)					coding (304/1704 nt)	yfjW	predicted inner membrane protein

TAAGGCGTGTATTAACGCCACATCTGTTATTGTTAGTACAATCCATGTAATAGCTAATAATGTTAAATAAGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/2772327‑2772255 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agctATTACATGGATTGTACTAACAATAACAGATGTGGCGTTAATACACGCCTTAGACAATATAGCCATGAA  >  W3110S.gb/2772277‑2772344                                                                                                                                               TAAGGCGTGTATTAACGCCACATCTGTTATTGTTAGTACAATCCATGTAATAGCTAATAATGTTAAATAAG                                                                        >  1:2142934/1‑71  AAGGCGTGTATTAACGCCACATCTGTTATTGTTAGTACAATCCATGTAATAGCTAATAATGTTAAATAAGC                                                                       >  1:3026107/1‑71   AGGCGTGTATTAACGCCACATCTGTTATTGTTAGTACAATCCATGTAATAGCTAATAATGTTAAATAAGCT                                                                      >  1:2177095/1‑71   AGGCGTGTATTAACGCCACATCTGTTATTGTTAGTACAATCCATGTAATAGCTAATAATGTTAAATAA                                                                         <  1:3659416/68‑1            TTAACGCCACATCTGTTATTGTTAGTACAATCCATGTAATAGCTAATAATGTTAAATAAGC                                                                       <  1:2393446/61‑1                                              TGTAATAGCTAATAATTTTAAATAAGCTATTACATGGATTGTACTAACAATAACAGATGTGGCGTTAATA                            >  1:2892586/1‑70                                                      CTAATAATGTTAAATAAGCTATTACATGGATTGTACTAACAATAACAGATGTGGCGTTATTA                            <  1:3688237/62‑1                                                        AATAATGTTAAATAAGCTATTACATGGATTGTACTAACAATAACAGATGTGGCGTTATTACA                          >  1:513960/1‑62                                                                       GCTATTACATGGATTGTACTAACAATAACAGATGTGGCGTTAATACACGCCTTAGACAATATAGCCATGAA  >  1:1816188/1‑71                                                                       GCTATTACATGGATTGTACTAACAATAACAGATGTGGCGTTAATACACGCCTTAGACAATATAGCCATG    <  1:857745/69‑1                                                                         TATTACATGGATTGTACTAACAATAACAGATGTGGCGTTAATACACGCCTTAGAC                <  1:385337/55‑1                                                                         TATTACATGGATTGTACTAACAATAACAGATGTGGCGTTAA                              <  1:175143/41‑1                                                                                                                                               TAAGGCGTGTATTAACGCCACATCTGTTATTGTTAGTACAATCCATGTAATAGCTAATAATGTTAAATAAGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/2772327‑2772255 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agctATTACATGGATTGTACTAACAATAACAGATGTGGCGTTAATACACGCCTTAGACAATATAGCCATGAA  >  W3110S.gb/2772277‑2772344

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.