New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	3698252 =	65 (1.700)	3 (0.090)	3/88	NT	5.1%	coding (205/993 nt)	rbsR	DNA‑binding transcriptional repressor
	?	W3110S.gb	3698272 =	54 (1.570)					coding (185/993 nt)	rbsR	DNA‑binding transcriptional repressor

ATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/3698326‑3698252 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccaATGGTATGTGTTTGATTGAGTTTGAGGCTACGCGCCAGAGCTGATGGCGCGTAATTGAGTTCTTTAATCG  >  W3110S.gb/3698272‑3698341                                                                                                                                                   ATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACT                                                                            >  1:1796242/1‑71  TTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTG                                                                           >  1:2867045/1‑71  TTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACT                                                                            >  1:1946916/1‑70     CGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCC                                                                         <  1:586822/70‑1                                 AAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCC                                                                         <  1:3597730/42‑1                                                   ACCATTGGCATGTTGATCACTGCCAATGGTATGTGTTTGATTGAGTTTGAGGCTACGCGCCAGAGCT                              >  1:476281/1‑67                                                     CATTGGCATGTTGATCACTGCCAATCGTATGTGTTTGATTGAGTTTGAGGCTACGCGCCAG                                  <  1:2922630/61‑1                                                               TTGATCACTGCCAGTGGTATGTGTTTGATTGAGTTTGAGGCTACGCGCCAGAGCTGATG                          >  1:1984416/1‑59                                                                       TGCCAATGGTATGTGTTTGATTGAGTTTGAGGCTACGCGCCAGAGCTGA                            <  1:3581259/49‑1                                                                         CCAATGGTATGTGTTTGATTGAGTTTGAGGCTACGCGCCAGAGCTGATGGCGCGTAATTGAGTTCTTTAA     <  1:2745427/70‑1                                                                           AATGGTATGTGTTTGATTGAGTTTGAGGCTACGCGCCAGAGCTGATGGCGCGTAATTGAGTTCTTTAATCG  >  1:1180363/1‑71                                                                           AATGGTATGTGTTTGATTGAGTTTGAGGCTACGCGCCAGA                                 >  1:2732616/1‑40                                                                                                                                                   ATTACGCGCCATCAGCTCTGGCGCGTAGCCTCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/3698326‑3698252 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccaATGGTATGTGTTTGATTGAGTTTGAGGCTACGCGCCAGAGCTGATGGCGCGTAATTGAGTTCTTTAATCG  >  W3110S.gb/3698272‑3698341

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.