Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC W3110S.gb 3,746,913 Δ1,199 bp 100% [tnaB][tnaB] [tnaB], insH, [tnaB]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ W3110S.gb 3746913–3748109 3748111 3–1199 79 [0] [0] 80 [tnaB]–[tnaB] [tnaB],insH,[tnaB]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb = 37469120 (0.000)64 (1.820) 41/90 NT 100% coding (71/447 nt) tnaB tryptophan transporter of low affinity
?W3110S.gb 3748112 = 0 (0.000)coding (871/984 nt) tnaB tryptophan transporter of low affinity

TTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/3746840‑3746912
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttagAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTGCCGAGGAACGATTTCACCAGCGAAT  >  W3110S.gb/3748112‑3748180
                                                                                                                                              
TTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGT                                                                          >  1:3581175/1‑70
  AAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTT                                                                         <  1:706653/69‑1
    ACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAG                                                                     <  1:3677275/71‑1
    ACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAG                                                                     <  1:1151988/71‑1
    ACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAG                                                                     <  1:2336358/71‑1
      AGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAg                                                                   <  1:3521750/71‑2
      AGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAg                                                                   <  1:190789/71‑2
        GTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACA                                                                 >  1:1456998/1‑71
           CGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCA                                                              <  1:2278372/71‑1
            GCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAG                                                             >  1:2104979/1‑71
              CAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACAC                                                                >  1:799412/1‑66
                 ATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGG                                                         >  1:8812/1‑70
                  TAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACAACAGCAcgg                                                        >  1:793912/1‑67
                    ATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAG                                                                     <  1:3570505/55‑1
                    ATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAG                                                                     <  1:1431980/55‑1
                    ATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTA                                                                        <  1:2409052/52‑1
                    ATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTA                                                                        <  1:2404803/52‑1
                       GAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACT                                                  >  1:1695972/1‑71
                       GAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTA                                                                        >  1:2040303/1‑49
                       GAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTCAGAGAACACCAGCAGGCAAAACT                                                  >  1:3654954/1‑71
                       GAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGT                                                                          >  1:146321/1‑47
                        AACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTC                                                 <  1:436332/71‑1
                         ACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGA                                                                    <  1:1627393/51‑1
                               CCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAG                                                                     <  1:3192491/44‑1
                                 AGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCC                                        >  1:1442148/1‑71
                                 AGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCC                                        >  1:1437923/1‑71
                                 AGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCC                                        <  1:948359/71‑1
                                    GTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTG                                     >  1:1036682/1‑71
                                    GTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAG                                                          >  1:1635937/1‑50
                                    GTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAG                                                                     <  1:1987256/39‑1
                                        CACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGT                                 <  1:444122/71‑1
                                         ACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACGAG                                                             <  1:3070441/42‑1
                                         ACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTT                                <  1:2136150/71‑1
                                         ACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAG                                                             <  1:2286995/42‑1
                                         ACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACA                                                                 <  1:1232476/38‑1
                                          CCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTT                               <  1:3641503/71‑1
                                          CCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTT                               >  1:539290/1‑71
                                          CCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTT                               <  1:2579405/71‑1
                                          CCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTG                                  <  1:434365/68‑1
                                          CCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAA                                                    <  1:1817154/50‑1
                                          CCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAA                                                      <  1:2282748/48‑1
                                          CCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGC                                                            <  1:3176715/42‑1
                                           CAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTG                              <  1:3355020/71‑1
                                           CAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTG                              >  1:1103144/1‑71
                                           CAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTG                              >  1:3153382/1‑71
                                           CAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTG                              >  1:3150821/1‑71
                                           CAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTG                              >  1:414164/1‑71
                                           CAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCG                                                <  1:2759351/53‑1
                                           CAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAA                                                    >  1:303873/1‑49
                                           CAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACA                                                                 >  1:2429913/1‑36
                                            AAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGAT                                              <  1:1652729/54‑1
                                             AAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGT                            <  1:3425681/71‑1
                                             AAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATA                                             >  1:2621733/1‑54
                                              AGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTG                           >  1:768665/1‑71
                                              AGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTG                           >  1:2440225/1‑71
                                              AGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAA                                            >  1:1199516/1‑54
                                               GAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTT                               >  1:1683280/1‑66
                                               GAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGA                                               <  1:3090832/50‑1
                                               GAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAA                                                      <  1:906202/43‑1
                                                AACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTGCC                         >  1:3213364/1‑71
                                                  CGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTGCC                         >  1:3480060/1‑69
                                                   GAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTGCCGAG                      <  1:20975/71‑1
                                                    AACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTGCCGA                       >  1:2912030/1‑69
                                                     ACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGAT                                              <  1:1130503/45‑1
                                                      CTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTC                                                 <  1:3320544/41‑1
                                                       TGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTT                                <  1:802204/57‑1
                                                       TGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTG                                  <  1:2878551/55‑1
                                                       TGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTG                                  <  1:173003/55‑1
                                                       TGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAA                                                      <  1:2969224/35‑1
                                                        GGCAACAGCTGAGTTAGAGAACACCAGCAGGCAAAA                                                    >  1:239241/1‑36
                                                        GGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAA                                                    >  1:438022/1‑36
                                                         GCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTGCCGAGGAACGA                >  1:3176532/1‑71
                                                         GCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTGCCGAGGAACG                 <  1:2548634/70‑1
                                                         GCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTGCCGAGGAAC                  <  1:1894033/69‑1
                                                         GCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAA                                            >  1:3297142/1‑43
                                                          CAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTGCCGAGGAACGAT               <  1:3541021/71‑1
                                                            ACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGAT                                              <  1:3320297/38‑1
                                                             CAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTGCCGAGGAACGATTTC            <  1:2647894/71‑1
                                                             CAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTGCCGAGGAACGATTT             >  1:1699272/1‑70
                                                              AGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGG                             >  1:2262182/1‑53
                                                                 TAAGTTAGAGAACACCAGCAGGCCAAACTCGATAATGCCGTGCT                                   <  1:257141/44‑1
                                                                  AAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTGCCGA                       >  1:2591795/1‑55
                                                                   AGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTGCCGAGGAACGATTTCACCAGC      >  1:2055893/1‑71
                                                                    GTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTT                               <  1:215842/45‑1
                                                                        GAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTGCCGAGGAACGATTTCACCAGCGAAT  >  1:2272527/1‑70
                                                                                                                                              
TTAAACAGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/3746840‑3746912
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttagAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTGCCGAGGAACGATTTCACCAGCGAAT  >  W3110S.gb/3748112‑3748180

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.