| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | W3110S.gb | 4,310,365 | Δ1,199 bp | 100% | insH–[alsK] | insH, [alsK] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | W3110S.gb | 4310365–4311561 | 4311563 | 3–1199 | 59 [0] | [0] 58 | insH–[alsK] | insH,[alsK] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 4310364 | 0 (0.000) | 49 (1.390) | 29/90 | NT | 100% | intergenic (‑286/‑69) | yjcS/insH | predicted alkyl sulfatase/IS5 element protein |
| ? | W3110S.gb | 4311564 = | 0 (0.000) | coding (916/1029 nt) | alsK | D‑allose kinase | |||||
TATATTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/4310294‑4310364‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAA > W3110S.gb/4311564‑4311624 TATATTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAG < 1:162890/71‑1 TGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCA > 1:3031430/1‑68 GTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTAATGGGGCTTTAGCACAG < 1:2305188/70‑1 CTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTG < 1:1007894/71‑1 GTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGC > 1:91344/1‑70 GGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAA > 1:641667/1‑70 GGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAA > 1:1843953/1‑70 GCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAA < 1:1034697/71‑1 ACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAAC < 1:95582/71‑1 ACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAAC < 1:91175/71‑1 CAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTT < 1:3342138/47‑1 AGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGT < 1:2989860/71‑1 AGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACG < 1:896121/70‑1 cgtGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACTTT < 1:570644/67‑1 CGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTG < 1:3311695/71‑1 GGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACT < 1:31213/54‑1 GGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAG < 1:146400/50‑1 GGGACATTGCGCTACTGTGCCAACGTTTTACTAATGGGGCTTTAGCACAGAACT < 1:3068606/54‑1 ATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTG < 1:294023/65‑1 ATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAG < 1:3554207/40‑1 TGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCC > 1:1029817/1‑70 TGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAG > 1:3480149/1‑38 GCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATTCGCCAA > 1:1050738/1‑71 GCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAA > 1:45595/1‑71 GCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGT > 1:1873348/1‑48 GCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACA > 1:2450530/1‑41 CGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAA < 1:906737/70‑1 TACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGC > 1:810409/1‑64 TACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTT < 1:1026918/57‑1 TACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTT < 1:2226846/57‑1 ACTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAAC > 1:2918175/1‑53 CTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGC > 1:3063544/1‑71 CTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGC < 1:3568746/71‑1 GTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTG > 1:3046816/1‑71 GTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGA > 1:3475830/1‑55 ACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAAT > 1:313387/1‑58 ACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTG < 1:707811/48‑1 ACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAA > 1:1722370/1‑43 ACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAA < 1:3040510/41‑1 CGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCT > 1:1933126/1‑70 CGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCT > 1:720949/1‑70 GTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCT > 1:3012492/1‑69 TTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAAC > 1:1297287/1‑41 TTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCG > 1:2810037/1‑71 TTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCG > 1:3137086/1‑71 TTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCG > 1:2925080/1‑71 ACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATA > 1:2933654/1‑52 ATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTA < 1:2675220/71‑1 ATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTA < 1:1353327/71‑1 ATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATT > 1:3405706/1‑70 ATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATA > 1:3607457/1‑48 ATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTT < 1:2642506/36‑1 TGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTA < 1:3143479/70‑1 GGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTA > 1:1311212/1‑69 GGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATT < 1:2413702/48‑1 GGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATT < 1:394465/48‑1 GGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATT < 1:1590972/48‑1 GGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAA < 1:3365298/70‑1 TAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATA > 1:2220856/1‑39 AGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGC > 1:2900955/1‑42 TATATTGTACCTGTCGTTGGCACAGCGGGACATTGCGCTACTGTGCCAACGTTTTACTCATGGGGCTTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/4310294‑4310364‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAA > W3110S.gb/4311564‑4311624 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |