| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2018571 = | 2 (0.050) | 33 (0.920) | 21/92 | NT | 94.6% | coding (567/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | 2519723 = | NA (NA) | intergenic (+33/‑54) | nupC/insL | nucleoside (except guanosine) transporter/predicted transposase | |||||
CTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTC > W3110S.gb/2519658‑2519787 | cTGGCTGCGTCAATCGCAGCACTGGTGCTGTAATACCATACATAAAAAAGCCGGGGATAATTCCCATAAg < 1:675474/70‑1 (MQ=255) gTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAgcgc > 1:628056/1‑71 (MQ=255) cTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCt > 1:343371/1‑70 (MQ=255) tGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTaa > 1:1354864/1‑71 (MQ=255) tGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTaa > 1:505551/1‑71 (MQ=255) tGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTaa > 1:2453840/1‑71 (MQ=255) aTCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAAATCCCATAAgct < 1:2647388/60‑2 (MQ=255) gcagcaCTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTa > 1:2031791/1‑65 (MQ=255) cagcaCTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTtg < 1:1916027/71‑1 (MQ=255) gTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCAATAAGCGCTAACTTaa > 1:356046/1‑57 (MQ=255) tAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCt > 1:3148073/1‑70 (MQ=255) catacataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACtt < 1:3141579/43‑1 (MQ=255) atacataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGa < 1:1760714/70‑1 (MQ=255) atacataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGa < 1:1442533/70‑1 (MQ=255) acataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAtt > 1:3495547/1‑70 (MQ=255) cataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTa > 1:2267282/1‑40 (MQ=255) taAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGa > 1:3682176/1‑60 (MQ=255) cGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATg < 1:1941745/71‑1 (MQ=39) cGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATg < 1:2085932/71‑1 (MQ=39) gggATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTaa < 1:1290718/59‑1 (MQ=255) gggATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGaa > 1:2732417/1‑71 (MQ=39) ggATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCt < 1:3133714/46‑1 (MQ=255) ggATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCt < 1:3143252/46‑1 (MQ=255) gATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTa > 1:2907334/1‑37 (MQ=255) tAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACg > 1:1046023/1‑57 (MQ=38) aTTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATg > 1:213060/1‑47 (MQ=35) aTTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActc > 1:1865375/1‑71 (MQ=32) | CTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTC > W3110S.gb/2519658‑2519787 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |