| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173564 | NA (NA) | 66 (1.760) | 33/96 | NT | 100% | pseudogene (307/2041 nt) pseudogene (307/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | 3920278 = | 0 (0.000) | coding (91/213 nt) | cspA | major cold shock protein | |||||
Only 100 of 155 total aligned reads displayed.
GTGAAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATA > W3110S.gb/3920208‑3920348 | gTGAAGGACAGTTTCTGACCTTCGTCCAGTGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGaa < 1:1885896/71‑1 (MQ=255) tGAAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGaa > 1:1364403/1‑70 (MQ=255) cctcagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcac < 1:2383541‑M2/2‑1 (MQ=255) aaGGACACTTTCTGACCTTCGTCCAGAGATTTTTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACAC < 1:2592399‑M2/71‑1 (MQ=255) aaGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACAC < 1:61644‑M2/71‑1 (MQ=255) cagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacact > 1:3286462‑M2/67‑70 (MQ=255) cagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacaca > 1:505932‑M2/67‑71 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacaca < 1:3620332‑M2/5‑1 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcac > 1:2488350‑M2/66‑67 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcac > 1:2009397‑M2/66‑67 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACAt > 1:454111‑M2/66‑71 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattaagtgggtaggatcACACAt > 1:2196262‑M2/66‑71 (MQ=255) gtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACTTc < 1:2696632‑M2/7‑1 (MQ=255) acacTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgat < 1:2972167‑M2/71‑5 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACActtcggt > 1:3599946‑M2/62‑68 (MQ=255) cTATCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtga < 1:3684789‑M2/67‑4 (MQ=255) gaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:1423151‑M2/1‑1 (MQ=255) tCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc < 1:1538138‑M2/71‑11 (MQ=255) atttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCa > 1:300127‑M2/55‑71 (MQ=255) aCCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtga < 1:170960‑M2/60‑4 (MQ=255) ccTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagc < 1:1478271‑M2/70‑15 (MQ=255) tgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACTtcg > 1:2671081‑M2/52‑58 (MQ=255) tgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCg > 1:1029589‑M2/52‑71 (MQ=255) cTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaa > 1:2136891‑M2/1‑55 (MQ=255) ttCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAac < 1:3122997/52‑1 (MQ=255) tCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaa < 1:1018838‑M2/69‑17 (MQ=255) tCATCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaa < 1:3526450‑M2/69‑17 (MQ=255) aaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGt < 1:1649079‑M2/21‑1 (MQ=255) aaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGt < 1:1829914‑M2/21‑1 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat > 1:1011984‑M2/1‑52 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat > 1:124922‑M2/1‑52 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTATACGAACACtgatcttacccagcaat > 1:2211159‑M2/1‑52 (MQ=255) aaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGt > 1:2868860‑M2/49‑69 (MQ=255) tCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtg > 1:100328‑M2/1‑50 (MQ=255) acaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:1734533‑M2/1‑1 (MQ=255) acaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACttcgg < 1:3226505‑M2/9‑3 (MQ=255) acaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAgg < 1:271270‑M2/25‑1 (MQ=255) ccAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtg > 1:1242081‑M2/1‑49 (MQ=255) cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaata < 1:3490835‑M2/66‑19 (MQ=255) aagaacctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:3378997‑M2/1‑1 (MQ=255) agaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGt < 1:827739‑M2/28‑1 (MQ=255) gagaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGaa > 1:1353153/1‑43 (MQ=255) gagaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggaca < 1:1632575‑M2/71‑26 (MQ=255) gaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGt < 1:832597‑M2/28‑1 (MQ=255) agaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAaca > 1:2875832/1‑44 (MQ=255) agaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacac < 1:2353583‑M2/71‑27 (MQ=255) ctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:3434490‑M2/1‑1 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgatg > 1:3293168‑M2/38‑69 (MQ=255) cgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTa > 1:3574159‑M2/37‑47 (MQ=255) cgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATc > 1:1582931‑M2/37‑55 (MQ=255) tAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggcta > 1:2219967‑M2/1‑38 (MQ=255) gcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAgg < 1:136668‑M2/25‑1 (MQ=255) tCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaata > 1:2455655‑M2/1‑32 (MQ=255) tCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttac > 1:2314874‑M2/1‑32 (MQ=255) tCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttaaccagcaatagtggacacgcggctaagtgag < 1:3675033‑M2/71‑40 (MQ=255) tCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatct > 1:702436‑M2/1‑32 (MQ=255) ctttgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCt < 1:1338844‑M2/44‑1 (MQ=255) ctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCt > 1:768980‑M2/28‑71 (MQ=255) ctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCt < 1:1114309‑M2/44‑1 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatc < 1:1969399‑M2/35‑6 (MQ=255) gtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGa > 1:245324‑M2/26‑51 (MQ=255) gtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgatg > 1:3006362‑M2/26‑57 (MQ=255) gtgtccatattacgtggtaggatcACACATCTTTAGAGCCATCGTCAGGa > 1:2146197‑M2/25‑50 (MQ=255) gtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGt > 1:2725019‑M2/24‑71 (MQ=255) tccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGt < 1:3570092‑M2/48‑1 (MQ=255) gATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactct < 1:3216534‑M2/71‑48 (MQ=255) catattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAg > 1:3457982‑M2/21‑71 (MQ=255) atattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGc > 1:375195‑M2/20‑71 (MQ=255) aTAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgag > 1:3043492‑M2/1‑23 (MQ=255) tattacgtgggtaggatcACACATCTTTAGAGCCATCGt < 1:1196319‑M2/21‑1 (MQ=255) tattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg < 1:1396238‑M2/24‑1 (MQ=255) tattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgatg < 1:1626201‑M2/32‑1 (MQ=255) tattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGt < 1:921984‑M2/28‑1 (MQ=255) tattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCg > 1:3248728‑M2/19‑71 (MQ=255) tAGCAGAGAAGTGTACGAACACtgatcttacccagcaatag > 1:866112‑M2/1‑22 (MQ=255) ttacgtgggtagtatcACACATCTTTAGAGCCATCGTc < 1:2789054‑M2/22‑1 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtga > 1:2500900‑M2/17‑46 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtg < 1:2229375‑M2/29‑1 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTc > 1:2964491‑M2/17‑65 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGtt > 1:1782347‑M2/17‑71 (MQ=255) agagAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaa > 1:3259196‑M2/1‑18 (MQ=255) acgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATCAAGCCGAAGCCTTTGTCAGCGTTg < 1:2293256‑M2/56‑1 (MQ=255) ggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAt > 1:2415603‑M2/10‑71 (MQ=255) taggatcACACATCTTTAGAGCCATCGTCAGGAGtgatg < 1:1101436‑M2/32‑1 (MQ=255) taggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAttt < 1:3185353‑M2/64‑1 (MQ=255) aggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAttt > 1:503573‑M2/7‑70 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgact < 1:3504887‑M2/71‑63 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgact < 1:3500657‑M2/71‑63 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgact < 1:3141754‑M2/71‑63 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagtga > 1:3641894‑M2/1‑9 (MQ=255) tACGAAAACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgact < 1:5720‑M2/71‑63 (MQ=255) ggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTa > 1:956819‑M2/6‑71 (MQ=255) cGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactca < 1:1295942‑M2/71‑65 (MQ=255) cGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactca < 1:1856948‑M2/71‑65 (MQ=255) cGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactca < 1:2760279‑M2/71‑65 (MQ=255) cGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagag < 1:3193269‑M2/63‑57 (MQ=255) cGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcaga < 1:603818‑M2/62‑56 (MQ=255) cACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGa > 1:1168836‑M2/2‑70 (MQ=255) ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGaa > 1:487702‑M2/1‑58 (MQ=255) ACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATa > 1:3694147‑M2/1‑71 (MQ=255) | GTGAAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATA > W3110S.gb/3920208‑3920348 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |