| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173565 | NA (NA) | 22 (0.570) | 19/98 | NT | 100% | pseudogene (306/2041 nt) pseudogene (306/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | = 3932933 | 0 (0.000) | coding (222/1608 nt) | dppA | dipeptide transporter | |||||
Only 100 of 105 total aligned reads displayed.
CCACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGT > W3110S.gb/3932863‑3932999 | ccaccTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTg > 1:1962486/1‑71 (MQ=255)catgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTg > 1:250185‑M2/68‑71 (MQ=255) atgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTg < 1:2582276‑M2/4‑1 (MQ=255) atgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTg < 1:2068394‑M2/4‑1 (MQ=255) tgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGAt < 1:2419186‑M2/6‑1 (MQ=255) accTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTg > 1:730453/1‑69 (MQ=255) aCCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtg > 1:887894‑M2/1‑69 (MQ=255) tgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGTGatt < 1:82574‑M2/7‑2 (MQ=255) gtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATc > 1:3571881‑M2/65‑71 (MQ=255) ccTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtga < 1:3338631‑M2/71‑4 (MQ=255) tgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATc < 1:2552142‑M2/7‑1 (MQ=255) gagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGTGatt > 1:1163994‑M2/64‑69 (MQ=255) cTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgat < 1:2161806‑M2/71‑5 (MQ=255) tATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatc < 1:570165‑M2/71‑6 (MQ=255) tATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatc < 1:2823927‑M2/71‑6 (MQ=255) tATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatc < 1:2836876‑M2/71‑6 (MQ=255) agtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGtgattaa < 1:2587182‑M2/9‑4 (MQ=255) agtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGtgattaa < 1:1002447‑M2/9‑4 (MQ=255) gtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCgg < 1:273661‑M2/11‑1 (MQ=255) acctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATccc > 1:3097901‑M2/58‑66 (MQ=255) tctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGtgattaa > 1:2410140‑M2/56‑61 (MQ=255) ctctgactgagagtttactcacttagccgcgtgtccactattgcttggtaagatcAGTGAt > 1:2370099‑M2/56‑61 (MQ=255) ctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTc > 1:407659‑M2/56‑71 (MQ=255) tctTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGt > 1:121315‑M2/1‑57 (MQ=255) tgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCt > 1:2690652‑M2/53‑71 (MQ=255) tgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCt > 1:1897533‑M2/53‑71 (MQ=255) ttCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgt < 1:2342717‑M2/70‑16 (MQ=255) actgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGtgattaa > 1:1314793‑M2/52‑57 (MQ=255) actgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTg < 1:2115376‑M2/4‑1 (MQ=255) actgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGa < 1:2591675‑M2/21‑1 (MQ=255) ctgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaa < 1:3604500‑M2/22‑1 (MQ=255) ctgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaa < 1:3042874‑M2/22‑1 (MQ=255) ccGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa > 1:441483‑M2/1‑53 (MQ=255) ccGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa < 1:1559859‑M2/70‑18 (MQ=255) cGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaat > 1:1631309‑M2/1‑52 (MQ=255) tCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatg > 1:1839275‑M2/1‑50 (MQ=255) agagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGa < 1:794965‑M2/5‑1 (MQ=255) agagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAg < 1:860940‑M2/25‑1 (MQ=255) agagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAg < 1:1602595‑M2/25‑1 (MQ=255) gagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAg > 1:2123467‑M2/46‑70 (MQ=255) ccGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatgga < 1:1742600‑M2/71‑24 (MQ=255) ccGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatc < 1:60395‑M2/53‑6 (MQ=255) tttactcacttagccgcgtgtccactattgctgggtaagatcAGTGAt < 1:297234‑M2/6‑1 (MQ=255) tttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATcc < 1:3435720‑M2/8‑1 (MQ=255) tttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAg < 1:3236904‑M2/25‑1 (MQ=255) tttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg < 1:276524‑M2/29‑1 (MQ=255) tttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg < 1:2065833‑M2/29‑1 (MQ=255) gCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggaca < 1:2660112‑M2/71‑26 (MQ=255) ttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg > 1:1905628‑M2/42‑70 (MQ=255) cTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacac > 1:1851246‑M2/1‑45 (MQ=255) cTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatgga > 1:1791791‑M2/1‑45 (MQ=255) tttATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatg > 1:2247314‑M2/1‑44 (MQ=255) tactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg > 1:198951‑M2/41‑69 (MQ=255) tactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGACTCGCTGAAAAGTg > 1:2263755‑M2/41‑67 (MQ=255) ctcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCggg < 1:2498054‑M2/12‑1 (MQ=255) taACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcc < 1:791090‑M2/71‑32 (MQ=255) acttagccgcgtgtccactattgctgggtaagatcaAGTgatta > 1:1616528‑M2/37‑42 (MQ=255) acttagccgcgtgtccactattgctgggtaagatcAGTGAt > 1:2289596‑M2/36‑41 (MQ=255) ttagccgcgtgtccactattgctgggtaagatcaAGTGatt < 1:2123101‑M2/7‑2 (MQ=255) ttagccgcgtgtccactattgctgggtaagatcaAGTGatt < 1:2893294‑M2/7‑2 (MQ=255) ttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGc > 1:397491‑M2/34‑70 (MQ=255) gccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGaa < 1:2728269‑M2/40‑1 (MQ=255) gccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGaa < 1:211946‑M2/40‑1 (MQ=255) ccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGa < 1:1070454‑M2/42‑1 (MQ=255) gcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaaaa > 1:2005429‑M2/28‑51 (MQ=255) gtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACgg > 1:351065‑M2/26‑70 (MQ=255) gtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACgg > 1:201477‑M2/26‑70 (MQ=255) tccactattgctgggtaagatgAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaa < 1:1303887‑M2/48‑1 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGc < 1:2827420‑M2/37‑1 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaaa < 1:1980350‑M2/49‑1 (MQ=255) tttAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttctt > 1:1554734‑M2/1‑24 (MQ=255) cactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg < 1:1943870‑M2/38‑1 (MQ=255) cactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAc > 1:1098149‑M2/21‑71 (MQ=255) actattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAcc < 1:1218511‑M2/52‑1 (MQ=255) actattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAcc < 1:3237445‑M2/52‑1 (MQ=255) tAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaa < 1:611781‑M2/56‑35 (MQ=255) ctattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaaaa < 1:1959181‑M2/24‑1 (MQ=255) tattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTgg < 1:2551463‑M2/28‑1 (MQ=255) attgctgggtaagatcAGTGATCACGGGCCTCGCTGAAAAGTGGGaa > 1:3691126‑M2/17‑47 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGaa > 1:331731‑M2/16‑46 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCtata > 1:504557‑M2/16‑71 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta > 1:3684156‑M2/16‑69 (MQ=255) aaTCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttca > 1:2183917‑M2/1‑19 (MQ=255) aaTCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacagg > 1:95109‑M2/1‑19 (MQ=255) tgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCtata < 1:1249294‑M2/56‑1 (MQ=255) aTCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaa > 1:2224938‑M2/1‑18 (MQ=255) tCGGCACCACCGAAGTGtgatcctacccacgtaatatggacac > 1:2881925‑M2/1‑17 (MQ=255) tgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGa < 1:2615904‑M2/42‑1 (MQ=255) tgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATAc > 1:3238638‑M2/12‑68 (MQ=255) ggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACgg > 1:1349881‑M2/10‑54 (MQ=255) caccacCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgt > 1:2475632‑M2/1‑13 (MQ=255) caccacCGAAGTGtgatcctacccacgtaatatgga < 1:195524‑M2/36‑24 (MQ=255) gtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg < 1:339017‑M2/29‑1 (MQ=255) gtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCa > 1:2231219‑M2/9‑71 (MQ=255) taagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGaa > 1:826279‑M2/8‑47 (MQ=255) taagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCAt > 1:153024‑M2/8‑71 (MQ=255) ccaccGAAGTGtgatcctacccacgtaatatggac > 1:2996403‑M2/1‑11 (MQ=255) caccGAAGTGtgatcctacccacgtaatatggaca > 1:2678668‑M2/1‑10 (MQ=255) tcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaaaa > 1:1712496‑M2/3‑52 (MQ=255) aGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGt < 1:1329397/70‑1 (MQ=255) | CCACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGT > W3110S.gb/3932863‑3932999 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |