| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 4547364 = | 37 (0.970) | 8 (0.260) | 8/80 | NT | 23.1% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | 4547678 = | 23 (0.730) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
AAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAG > W3110S.gb/4547612‑4547747 | aaGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGtt > 1:2053473/1‑71 (MQ=255) gCCAAGAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTc < 1:2365012/71‑1 (MQ=255) aacaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATc < 1:855453/71‑1 (MQ=255) acaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCaaa > 1:3650892/1‑61 (MQ=255) acaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGtt > 1:3335007/1‑65 (MQ=255) acaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCt > 1:3165358/1‑71 (MQ=255) tttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCtt < 1:2997456‑M2/12‑1 (MQ=255) aaaTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCttt < 1:2776423/71‑1 (MQ=255) aTAAACTGATAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCaaa > 1:2212695/1‑57 (MQ=255) aTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTg < 1:3353219/71‑1 (MQ=255) aTAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTg > 1:211121/1‑71 (MQ=255) tAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTgg < 1:986407/71‑1 (MQ=255) aaaCTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCa > 1:1055219/1‑62 (MQ=255) aaCTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCtt > 1:1160970/1‑65 (MQ=255) cttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGaa < 1:2531286‑M2/21‑1 (MQ=255) ttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGaa > 1:1774811‑M2/50‑70 (MQ=255) aaaaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGaaaa > 1:2657694/1‑71 (MQ=255) aaaaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGaa < 1:2596589/69‑1 (MQ=255) gagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAAc > 1:1723935‑M2/48‑71 (MQ=255) aaaGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTg > 1:3194151/1‑61 (MQ=255) gTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACtgtg > 1:1069133/1‑71 (MQ=255) tttGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGc < 1:2947431/71‑1 (MQ=255) aaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACtgtg > 1:493608‑M2/43‑70 (MQ=255) gtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTgggg > 1:396442‑M2/36‑53 (MQ=255) gcgATGCTTTACTCTATGAGTCAAAATGG‑‑CCAAATGTTTCATCttt < 1:3611736/46‑1 (MQ=255) gATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTgg < 1:1922130/70‑1 (MQ=255) aTGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCtt < 1:3375371/44‑1 (MQ=255) tCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCa < 1:881019/69‑1 (MQ=255) tatgatatggacagtttggccccaaATGTTTCATCTTTTgg < 1:2687171‑M2/16‑1 (MQ=255) tGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGc > 1:2239481/1‑48 (MQ=255) tGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCg < 1:3088316/68‑1 (MQ=255) tggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTa < 1:648209‑M2/53‑1 (MQ=255) gTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTac < 1:1428638/70‑1 (MQ=255) tCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACtgtg < 1:2901908/43‑1 (MQ=255) tCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAg < 1:2579621/46‑1 (MQ=255) cagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaa > 1:2456995‑M2/15‑70 (MQ=255) aaaaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCa > 1:2828211/1‑43 (MQ=255) aaTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaaca < 1:1063193/71‑1 (MQ=255) tggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAg > 1:2133138‑M2/10‑40 (MQ=255) ccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgtg < 1:2917759‑M2/65‑1 (MQ=255) cccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgtgt < 1:2769030‑M2/66‑1 (MQ=255) caaATGTTTCATCTTTTGGGGGAAAACTGTGCAgt < 1:2584179‑M2/32‑1 (MQ=255) caaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGtt < 1:2739846‑M2/35‑1 (MQ=255) caaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTc < 1:3417393‑M2/48‑1 (MQ=255) caaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTa > 1:3491501‑M2/4‑70 (MQ=255) aaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgtgt > 1:3585542‑M2/3‑68 (MQ=255) aaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTa > 1:3066900‑M2/3‑69 (MQ=255) aATGTTTCATCTTTTGGGGGAAAACTGTGCAgtgt > 1:497832‑M2/2‑35 (MQ=255) aATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCaa > 1:260419‑M2/2‑45 (MQ=255) aATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaa < 1:2535724‑M2/56‑1 (MQ=255) aATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAg < 1:800993‑M2/70‑1 (MQ=255) aATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAg < 1:1439817‑M2/70‑1 (MQ=255) aTGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACa > 1:1637297/1‑69 (MQ=255) | AAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAG > W3110S.gb/4547612‑4547747 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |