| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | W3110S.gb | 3,721,254 | A→C | 23.4% | intergenic (+124/‑229) | atpC → / → glmU | F1 sector of membrane‑bound ATP synthase, epsilon subunit/fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase and glucosamine‑1‑phosphate acetyl transferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 3,721,254 | 0 | A | C | 23.4% | 82.3 / 47.9 | 70 | intergenic (+124/‑229) | atpC/glmU | F1 sector of membrane‑bound ATP synthase, epsilon subunit/fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase and glucosamine‑1‑phosphate acetyl transferase |
| Reads supporting (aligned to +/- strand): ref base A (24/29); new base C (5/11); total (29/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.94e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.71e-01 | |||||||||||
GTGTGACCCGTCCTGAATAGCGTTCACATAGATCCTGCTGATATAAAACCCCCCTGTTTTCCTGTTTATTCATTGATCGAAATAAGAGCAAAAACATCCACCTGACGCTTAAATTAAGGTACTGCCTTAATTTTCTG > W3110S.gb/3721187‑3721323 | gtgtGACCCGTCCTGAATAGCGTTCACATAGATCCTGCTGATATAAAACCCCCCTGTTTTCCTGTTTAtt > 1:760983/1‑70 (MQ=255) tgtgACCCGTCCTGAATAGCGTTCACATAGATCCTGCTGATATAAAACCCCCCTGTTTTCCTGTTTATTCa < 1:1495618/71‑1 (MQ=255) tCCTGAATAGCGTTCACATAGATCCTGCTGATATAAAACCCCCCTGTTTTCCTGTTTATTCATTGATCGaa < 1:1067227/71‑1 (MQ=255) cTGAATAGCGTTCACATAGATCCTGCTGATATAAAACCCCCCTGTTTTCCTGTTTATTCATTGATCGaaa > 1:3200877/1‑70 (MQ=255) aaTAGCGTTCACATAGATCCTGCTGATATAAAACCCCCCTGTTTTCCTGTTTATTCATTGATCGAAATaa < 1:3454509/70‑1 (MQ=255) cGTTCACATAGATCCTGCTGATATAAAACCACCCTGTTTTCCTGTTTATTCATTGATCGAAATaa > 1:2147202/1‑65 (MQ=255) gTTCACATAGATCCTGCTGATATAAAACCCCCCTGTTTTCCTGTTTATTCATTGATCGAAATaa < 1:2886120/64‑1 (MQ=255) gTTCACATAGATCCTGCTGATATAAAACCCCCCTGTTTTCCTGTTTATTCATTGATCGAAATAAGAGCaaa < 1:222809/71‑1 (MQ=255) gTTCACATAGATCCTGCTGATATAAAACCCCCCTGTTTTCCTGTTTATTCATTGATCGAAATAAGAGCaaa < 1:2735123/71‑1 (MQ=255) ttCACATAGATCCTGCTGATATAAAACCCCCCTGTTTTCCTGTTTATTCATTGATCGAAATAAGAGCaaa < 1:1083152/70‑1 (MQ=255) acaTAGATCCTGCTGATATAAAACCCCCCTGTTTTCCTGTTTATTCATTGATCGAAATAAGAGCAAAAAc < 1:2499438/70‑1 (MQ=255) caTAGATCCTGCTGATATAAAACCCCCCTGTTTTCCTGTTTAtt < 1:757309/44‑1 (MQ=255) tAGATCCTGCTGATATAAAACCCCCCTGTTTTCCTGTTTATTCATTGATCGAAATAAGAGCAAAAACATcc < 1:2300016/71‑1 (MQ=255) tAGATCCTGCTGATATAAAACCCCCCTGTTTTCCTGTTTATTCATTGATCGAAATAAGAGCAAAAACATc > 1:3243877/1‑70 (MQ=255) aGATCCTGCTGATATAAAACCCCCCTGTTTTCCTGTTTATTCa > 1:3612018/1‑43 (MQ=255) aTCCTGCTGATATAAAACCCCCCTGTTTTCCTGTTTATTCATTGATCGAAATAAGAGCa < 1:3251117/59‑1 (MQ=255) ccTGCTGATATAAAACCCCCCTGTTTTCCTGTTTATTCATTGATCGAAATAAGAGCAAAAACATCCACCt > 1:105708/1‑70 (MQ=255) ctgctgATATAAAACCCCCCTGTTTTCCTGTTTAtt < 1:3213723/36‑1 (MQ=255) ctgctgATATAAAACCCCCCTGTTTTCCTGTTTATTCATTGATCGAAATAAGAGCAAAAACATCCACCTg < 1:268101/70‑1 (MQ=255) ctgATATAAAACCCCCCTGTTTTCCTGTTTATTCATTGATCGAAATAAGAGCAAAAACATCCACCTGACGc > 1:1985888/1‑71 (MQ=255) gATATAAAACCCCCCTGTTTTCCTGTTTATTCATTGATCGAAATAAGAGCAAAAACATCCACCTg > 1:1053758/1‑65 (MQ=255) gATATAAAACCCCCCTGTTTTCCTGTTTATTCATTGATCGAAATAAGAGCAAAAACATCCACCTGACGCt > 1:3066788/1‑70 (MQ=255) gATATAAAACCCCCCTGTTTTCCTGTTTATTCATTGATCGAAATAAGAGCAAAAACATCCACCTGACGCt > 1:1140953/1‑70 (MQ=255) atatAAAACCCCCCTGTTTTCCTGTTTATTCATTGATCGAAATAAGAGCAAAAACATCCACCTGACGCt > 1:2487464/1‑69 (MQ=255) atatAAAACCCCCCTGTTTTCCTGTTTATTCATTGATCGAAATAAGAGCAAAAACATCCACCTGACGCTTa < 1:1929079/71‑1 (MQ=255) tataAAACCCCCCTGTTTTCCTGTTTATTCATTGATCGAAATAAGAGCAAAAACATCCACCTGACGCTTa < 1:3545570/70‑1 (MQ=255) taAAACCCCCCTGTTTTCCTGTTTATTCATTGATCGAAAt < 1:568005/40‑1 (MQ=255) taAAACCCCCCTGTTTTCCTGTTTATTCATTGATCGAAATAAGAGCaaaa < 1:853500/50‑1 (MQ=255) taAAACCCCCCTGTTTTCCTGTTTATTCATTGATCGAAATAAGAGCAAAAACATCCACCTGACGCTTa < 1:1847006/68‑1 (MQ=255) aaaCCCCCCTGTTTTCCTGTTTATTCATTGATCGAAATaa < 1:3157478/40‑1 (MQ=255) aaaCCCCCCTGTTTTCCTGTTTATTCATTGATCGAAATAAGAGCAAAAACATCCACCTGACGCTTaaa > 1:1655298/1‑68 (MQ=255) aaaCCCCCCTGTTTTCCTGTTTATTCATTGATCGAAATAAGAGCAAAAACATCCACCTGACGCTTAAAtt < 1:2113947/70‑1 (MQ=255) aaaCCCCCCTGTTTTCCTGTTTATTCATTGATCGAAATAAGAGCAAAAACATCCACCTGACGCTTAAAtt > 1:3630826/1‑70 (MQ=255) aaCCCCCCTGTTTTCCTGTTTATTCATTGATCGAAATAAGAGCAAAAACATCCACCTGACGCTTAAATTaa < 1:159033/71‑1 (MQ=255) aCCCCCCTGTTTTCCTGTTTATTCATTGATCGaaa < 1:3466849/35‑1 (MQ=255) ccccTGTTTTCCTGTTTATTCATTGATCGAAATAAGAGCaaaa < 1:3663074/43‑1 (MQ=255) ttgTTTTCCTGTTTCTTtttcaatgatgtcagataaat < 1:1048223‑M1/37‑22 (MQ=255) ttgTTTTCCTGTTTCTTtttcaatgatgtcagataaat < 1:2359972‑M1/37‑22 (MQ=255) ttgTTTTCCTGTTTCTTtttcaatgatgtcagataaat < 1:1167964‑M1/37‑22 (MQ=255) ttgTTTTCCTGTTTCTTtttcaatgatgtcagataaat < 1:727547‑M1/37‑22 (MQ=255) ttgTTTTCCTGTTTCTTtttcaatgatgtcagataaa < 1:3181291‑M1/36‑21 (MQ=255) ttgTTTTCCTGTTTCTTtttcaatgatgtcagataaa < 1:1507670‑M1/36‑21 (MQ=255) ttgTTTTCCTGTTTCTTtttcaatgatgtcagataa < 1:2168559‑M1/35‑20 (MQ=255) cTGTTTTCCTGTTTATTCATTGATCGAAATAAGAGCAAAAACa < 1:3557049/43‑1 (MQ=255) tGTTTTCCTGTTTCTTtttcaatgatgtcagataaatt > 1:1522072‑M1/1‑16 (MQ=255) tGTTTTCCTGTTTCTTtttcaatgatgtcagataaat < 1:1705872‑M1/37‑22 (MQ=255) tGTTTTCCTGTTTCTTtttcaatgatgtcagataaa < 1:2079721‑M1/36‑21 (MQ=255) tGTTTTCCTGTTTATTCATTGATCGAAATAAGAGCAAAAAc > 1:2814279/1‑41 (MQ=255) tGTTTTCCTGTTTATTCATTGATCGAAATAAGAGCAAAAACAt > 1:3259934/1‑43 (MQ=255) tGTTTTCCTGTTTATTCATTGATCGAAATAAGAGCAAAAACATCCACCTGACGCTTAAATTAAgg < 1:1316659/65‑1 (MQ=255) tGTTTTCCTGTTTATTCATTGATCGAAATAAGAGCAAAAACATCCACCTGACGCTTAAATTAAgg < 1:1557290/65‑1 (MQ=255) tGTTTTCCTGTTTATTCATTGATCGAAATAAGAGCAAAAACATCCACCTGACGCTTAAATTAAGGTa > 1:2732782/1‑67 (MQ=255) gTTTTCCTGTTTGTTCATTGTTCGAAATAAGAGCa < 1:2644207/35‑1 (MQ=38) gTTTTCCTGTTTCTTtttcaatgatgtcagataaatt > 1:1301052‑M1/1‑15 (MQ=255) gTTTTCCTGTTTCTTtttcaatgatgtcagataaatt > 1:2456335‑M1/1‑15 (MQ=255) gTTTTCCTGTTTCTTtttcaatgatgtcagataaat > 1:1413530‑M1/1‑15 (MQ=255) gTTTTCCTGTTTCTTtttcaatgatgtcagataaat < 1:625902‑M1/36‑22 (MQ=255) gTTTTCCTGTTTCTTtttcaatgatgtcagataaa < 1:2150284‑M1/35‑21 (MQ=255) ttttCCTGTTTATTCATTGATCGAAATAAGAGCAAAAACATCCACCTGa > 1:2593478/1‑49 (MQ=255) ttttCCTGTTTATTCATTGATCGAAATAAGAGCAAAAACATCCACCTGACGCTTaaa > 1:729760/1‑57 (MQ=255) ttttCCTGTTTATTCATTGATCGAAATAAGAGCAAAAACATCCACCTGACGCTTAAATTAAGGTACTGCCt > 1:3081204/1‑71 (MQ=255) tttCCTGTTTCTTtttcaatgatgtcagataaatt > 1:3048882‑M1/1‑13 (MQ=255) ttCCTGTTTATTCATTGATCGAAATAAGAGCAAAAACATCCACCt > 1:3116730/1‑45 (MQ=255) ttCCTGTTTATTCATTGATCGAAATAAGAGCAAAAACATCCACCTGACg > 1:1383417/1‑49 (MQ=255) tCCTGTTTATTCATTGATCGAAATAAGAGCAAAAACATCCACCTGACGCTTAAATTAAGGTACTGCCTTa < 1:2451832/70‑1 (MQ=255) ccTGTTTATTCATTGATCGAAATAAGAGCAAAAACATCCACCTGACGCTTAAATTAAGGTACTGCCTTa < 1:1639586/69‑1 (MQ=255) tttATTCATTGATCGAAATAAGAGCAAAAACATCCACCTGACGCTTAAATTAAGGTACTGCCTTAAtttt > 1:2965364/1‑70 (MQ=255) ttATTCATTGATCGAAATAAGAGCAAAAACATCCACCTg < 1:3203284/39‑1 (MQ=255) tATTCATTGATCGAAATAAGAGCAAAAACATCCACCTGACGCTTAAATTAAGGTACTGCCTTAAt > 1:2549391/1‑65 (MQ=255) tATTCATTGATCGAAATAAGAGCAAAAACATCCACCTGACGCTTAAATTAAGGTACTGCCTTAATTTTCTg > 1:1434404/1‑71 (MQ=255) aTTCATTGATCGAAATAAGAGCAAAAACATCCACCTGACGCTTAAATTAAGGTACTGCCTTAATTTTCTg > 1:3706550/1‑70 (MQ=255) | GTGTGACCCGTCCTGAATAGCGTTCACATAGATCCTGCTGATATAAAACCCCCCTGTTTTCCTGTTTATTCATTGATCGAAATAAGAGCAAAAACATCCACCTGACGCTTAAATTAAGGTACTGCCTTAATTTTCTG > W3110S.gb/3721187‑3721323 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |