Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 71,082 T→C 93.2% I232I (ATT→ATC araC → DNA‑binding transcriptional dual regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb71,0820TC93.2% 1934.8 / 80.0 620I232I (ATT→ATCaraCDNA‑binding transcriptional dual regulator
Reads supporting (aligned to +/- strand):  ref base T (25/17);  new base C (239/337);  total (265/355)
Fisher's exact test for biased strand distribution p-value = 2.44e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 623 total aligned reads displayed.

CGTCTGTCACATCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTT  >  W3110S.gb/71014‑71151
                                                                    |                                                                     
  tCTGTCACATCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAgcc                                                                   <  1:3227687/71‑3 (MQ=255)
  tCTGTCACATCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAgcc                                                                   <  1:1880180/71‑3 (MQ=255)
  tCTGTCACATCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTc                                                                   <  1:2317158/71‑1 (MQ=255)
   cTGTCACATCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAgc                                                                    >  1:164997/1‑68 (MQ=255)
    tGTCACATCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAg                                                                 >  1:865641/1‑71 (MQ=255)
      tCACATCTTCTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGc                                                               <  1:38034/71‑1 (MQ=255)
       cacaTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGc                                                               >  1:628078/1‑70 (MQ=255)
        acaTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAgc                                                                    <  1:2740621/64‑2 (MQ=255)
        acaTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCg                                                              <  1:2299763/70‑1 (MQ=255)
        acaTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGa                                                             <  1:3482000/71‑1 (MQ=255)
        acaTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGa                                                             <  1:146158/71‑1 (MQ=255)
        acaTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCg                                                              <  1:2725812/70‑1 (MQ=255)
         caTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCg                                                              >  1:1227485/1‑69 (MQ=255)
         caTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGaa                                                            <  1:1750824/71‑1 (MQ=255)
          aTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGaa                                                            <  1:1335161/70‑1 (MQ=255)
          aTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAg                                                           >  1:2394771/1‑71 (MQ=255)
           tCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGaa                                                            >  1:2192975/1‑69 (MQ=255)
           tCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAgc                                                          >  1:3667239/1‑71 (MQ=255)
            cTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAgct                                                         >  1:3528162/1‑71 (MQ=255)
             ttttCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAgctg                                                        >  1:1824156/1‑71 (MQ=255)
              tttCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAg                                                                 >  1:3711107/1‑61 (MQ=255)
               ttCCGCCAGCATTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAgctgc                                                       <  1:770302/70‑1 (MQ=255)
               ttCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAgctgct                                                      >  1:2817167/1‑71 (MQ=255)
                 ccGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCtt                                                     <  1:1596889/70‑1 (MQ=255)
                  ggCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCtttt                                                   <  1:719296/70‑1 (MQ=255)
                  cGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCtttt                                                   <  1:2799419/71‑1 (MQ=255)
                  cGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCtttt                                                   <  1:1405604/71‑1 (MQ=255)
                  cGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCtttt                                                   <  1:1931359/71‑1 (MQ=255)
                  cGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCtttt                                                   <  1:3014522/71‑1 (MQ=255)
                   gCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTg                                                  <  1:1001375/71‑1 (MQ=255)
                   gCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTg                                                  <  1:590884/71‑1 (MQ=255)
                     cagcagTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAg                                                <  1:2137574/71‑1 (MQ=255)
                      agcagTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGc                                               <  1:511818/71‑1 (MQ=255)
                        cagTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCAc                                             <  1:3291343/71‑1 (MQ=255)
                         agTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCAc                                             <  1:559217/70‑1 (MQ=255)
                          gTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCAcc                                            >  1:2615186/1‑69 (MQ=255)
                           ttAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAgct                                                         <  1:3692320/56‑1 (MQ=255)
                           ttAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCtttt                                                   <  1:3259111/62‑1 (MQ=255)
                             aGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAgg                                                                >  1:3373921/1‑47 (MQ=255)
                             aGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCtttt                                                   >  1:2452725/1‑60 (MQ=255)
                             aGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCAccc                                        >  1:810047/1‑71 (MQ=255)
                              gggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                       <  1:947687/71‑1 (MQ=255)
                              gggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                       <  1:2597541/71‑1 (MQ=255)
                              gggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                       <  1:2120370/71‑1 (MQ=255)
                              gggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCg                                                              >  1:1526733/1‑48 (MQ=255)
                                gATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCa                                              >  1:2892648/1‑62 (MQ=255)
                                 aTTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGaa                                                            >  1:1969755/1‑47 (MQ=255)
                                  ttAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCa                                                                  <  1:157530/40‑1 (MQ=255)
                                  ttAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGa                                                             <  1:442484/45‑1 (MQ=255)
                                  ttAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAg                                                <  1:3200808/58‑1 (MQ=255)
                                  ttAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATg                                   <  1:2867438/71‑1 (MQ=255)
                                  ttAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTg                                                  <  1:2002782/56‑1 (MQ=255)
                                   tAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAg                                                           <  1:3412329/46‑1 (MQ=255)
                                    aGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGaa                                                            <  1:688007/44‑1 (MQ=38)
                                    aGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGa                                     >  1:3548016/1‑67 (MQ=255)
                                    aGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGc                                  <  1:3444025/70‑1 (MQ=255)
                                    aGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGc                                  >  1:1496549/1‑70 (MQ=255)
                                     gCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCt                                <  1:3124117/71‑1 (MQ=255)
                                     gCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCt                                <  1:935375/71‑1 (MQ=255)
                                     gCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCAGGATGcc                                 >  1:2469046/1‑70 (MQ=255)
                                       gTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTa                               >  1:1780661/1‑70 (MQ=255)
                                       gTCTTAAGCTGGCGCGACGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTAt                              <  1:2945159/71‑1 (MQ=255)
                                        tCTTAAGCTGGCGCGAGGTCCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCt                                <  1:410891/68‑1 (MQ=255)
                                        tCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCtttt                                                   <  1:2647905/49‑1 (MQ=255)
                                        tCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCtt                                                     <  1:1181564/47‑1 (MQ=255)
                                        tCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGa                                                 <  1:333316/51‑1 (MQ=255)
                                        tCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCaccacc                                         >  1:474006/1‑59 (MQ=255)
                                          ttAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAgctgct                                                      <  1:398643/44‑1 (MQ=38)
                                          ttAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAgctgc                                                       <  1:2077613/43‑1 (MQ=37)
                                          ttAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCtttt                                                   <  1:1105033/47‑1 (MQ=255)
                                          ttAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCa                                              >  1:3400758/1‑52 (MQ=255)
                                          ttAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCAc                                             >  1:1041291/1‑53 (MQ=255)
                                          ttAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGc                           >  1:3106038/1‑71 (MQ=255)
                                          ttAAGCTGGCGCGAGGACCAAAGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGa                                     >  1:3631178/1‑61 (MQ=255)
                                           tAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCtttt                                                   >  1:2033380/1‑46 (MQ=255)
                                            aaGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGcc                          <  1:1266773/70‑1 (MQ=255)
                                            aaGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGc                           <  1:899032/69‑1 (MQ=255)
                                            aaGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCa                         >  1:2516207/1‑71 (MQ=255)
                                            aaGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCa                         >  1:1297921/1‑71 (MQ=255)
                                            aaGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCa                         >  1:495424/1‑71 (MQ=255)
                                             aGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCa                         <  1:256907/70‑1 (MQ=255)
                                              gCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCAcc                       <  1:318542/71‑1 (MQ=255)
                                                tGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCgt                     >  1:2059344/1‑71 (MQ=255)
                                                  gcgcGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACGACCCGGATGCCTATCGCCACCgt                     <  1:660567/69‑1 (MQ=255)
                                                  gcgcGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCgt                     <  1:173166/69‑1 (MQ=255)
                                                   cgcgAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                       <  1:2702813/50‑1 (MQ=255)
                                                      gAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAg                                                <  1:1612008/38‑1 (MQ=25)
                                                       aGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                       <  1:3607507/46‑1 (MQ=255)
                                                         gACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCaa            <  1:1382364/71‑1 (MQ=255)
                                                          aCCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAAt           >  1:1436502/1‑71 (MQ=255)
                                                           ccAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGa                                     >  1:3075882/1‑44 (MQ=25)
                                                            cAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCgtcggtcg               <  1:642853/65‑1 (MQ=255)
                                                            cAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGc              <  1:1670411/66‑1 (MQ=255)
                                                            cAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGt         <  1:2906947/71‑1 (MQ=255)
                                                              aCGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTAt                              >  1:2551807/1‑48 (MQ=255)
                                                              aCGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGtt        >  1:3579746/1‑70 (MQ=255)
                                                              aCGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTg       >  1:2341609/1‑71 (MQ=255)
                                                              aCGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTg       >  1:1068932/1‑71 (MQ=255)
                                                              aCGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATAGCCACCGTCGGTCGCAATGTTg       >  1:2244800/1‑71 (MQ=255)
                                                                   ttAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGttt   >  1:2970266/1‑70 (MQ=255)
                                                                    |                                                                     
CGTCTGTCACATCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTT  >  W3110S.gb/71014‑71151

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: