Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 71,085 T→C 92.3% S233S (AGT→AGC araC → DNA‑binding transcriptional dual regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb71,0850TC92.3% 1843.0 / 90.5 596S233S (AGT→AGCaraCDNA‑binding transcriptional dual regulator
Reads supporting (aligned to +/- strand):  ref base T (28/18);  new base C (229/320);  total (257/339)
Fisher's exact test for biased strand distribution p-value = 1.32e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.86e-01

Only 100 of 597 total aligned reads displayed.

TCTGTCACATCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGA  >  W3110S.gb/71016‑71153
                                                                     |                                                                    
    tCACATCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCa                                                                    <  1:3264162/68‑1 (MQ=255)
    tCACATCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGc                                                                 >  1:3114077/1‑71 (MQ=255)
    tCACATCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGc                                                                 >  1:415269/1‑71 (MQ=255)
    tCACATCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGc                                                                 >  1:2722041/1‑71 (MQ=255)
     cacaTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGc                                                                 >  1:628078/1‑70 (MQ=255)
     cacaTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGc                                                                 >  1:391714/1‑70 (MQ=255)
     cacaTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGAGAGGACCAACGTATCAGCCAGGc                                                                 >  1:1750089/1‑70 (MQ=255)
      acaTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCg                                                                >  1:26107/1‑70 (MQ=255)
      acaTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCg                                                                >  1:2031219/1‑70 (MQ=255)
      acaTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCg                                                                <  1:2002781/70‑1 (MQ=255)
      acaTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCg                                                                <  1:2861731/70‑1 (MQ=255)
      acaTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGa                                                               <  1:445410/71‑1 (MQ=255)
       caTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCg                                                                >  1:1227485/1‑69 (MQ=255)
        aTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAg                                                             <  1:89589/71‑1 (MQ=255)
        aTCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAg                                                             >  1:403650/1‑71 (MQ=255)
          cTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAgct                                                           >  1:2568968/1‑71 (MQ=255)
           ttttCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGaa                                                              >  1:2999347/1‑67 (MQ=255)
           ttttCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAgc                                                            >  1:564672/1‑69 (MQ=255)
            tttCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAgctgc                                                         >  1:2813973/1‑71 (MQ=255)
             ttCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAgctgct                                                        >  1:2736818/1‑71 (MQ=255)
             ttCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAgctgc                                                         <  1:2366725/70‑1 (MQ=255)
             ttCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAgctgc                                                         <  1:1304268/70‑1 (MQ=255)
                cGCCAGCAGTTAGGGGTTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCtttt                                                     <  1:2175520/71‑1 (MQ=255)
                cGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCtttt                                                     <  1:683364/71‑1 (MQ=255)
                cGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCtttt                                                     <  1:1931359/71‑1 (MQ=255)
                cGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCtttt                                                     <  1:48189/71‑1 (MQ=255)
                cGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCtttt                                                     <  1:505120/71‑1 (MQ=255)
                 gCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTg                                                    <  1:1001375/71‑1 (MQ=255)
                 gCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTg                                                    <  1:138745/71‑1 (MQ=255)
                   cagcagTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAg                                                  >  1:357712/1‑71 (MQ=255)
                   cagcagTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAg                                                  <  1:1482571/71‑1 (MQ=255)
                        gTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCtt                                                       <  1:1284665/61‑1 (MQ=255)
                         ttAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAgctgct                                                        <  1:1810425/59‑1 (MQ=255)
                         ttAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCtttt                                                     <  1:3442217/62‑1 (MQ=255)
                          tAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTg                                                    >  1:2118348/1‑62 (MQ=255)
                           aGGGATTAGCGTCTTAAGTTGGCGCGAGGACCAACGCATTAGTCAGGc                                                                 >  1:1723566/1‑48 (MQ=255)
                           aGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAgc                                                            >  1:3591796/1‑53 (MQ=255)
                           aGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAg                                                  >  1:3291616/1‑63 (MQ=255)
                           aGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAg                                                  >  1:718712/1‑63 (MQ=255)
                           aGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCAccc                                          >  1:3660395/1‑71 (MQ=255)
                           aGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCAccc                                          >  1:810047/1‑71 (MQ=255)
                            gggATTCGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                         <  1:288658/71‑1 (MQ=255)
                            gggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                         <  1:3178338/71‑1 (MQ=255)
                            gggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                         <  1:947687/71‑1 (MQ=255)
                            gggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                         <  1:2243739/71‑1 (MQ=255)
                            gggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                         <  1:2460131/71‑1 (MQ=255)
                            gggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                         <  1:2443662/71‑1 (MQ=255)
                            gcgATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                         <  1:158769/69‑1 (MQ=255)
                             ggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCg                                                                <  1:1507234/47‑1 (MQ=255)
                             ggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCg                                                                <  1:3093155/47‑1 (MQ=255)
                             ggATTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                         <  1:1880161/70‑1 (MQ=255)
                               aTTAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGaa                                                              >  1:1969755/1‑47 (MQ=255)
                                ttAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGa                                                   <  1:3681335/57‑1 (MQ=255)
                                ttAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATg                                     >  1:2549728/1‑71 (MQ=255)
                                 tAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAg                                                             <  1:3412329/46‑1 (MQ=255)
                                 tAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTg                                                    <  1:1063307/55‑1 (MQ=255)
                                 tAGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGc                                                 >  1:514735/1‑58 (MQ=255)
                                  aGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCtttt                                                     >  1:1601936/1‑53 (MQ=255)
                                  aGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGcc                                   >  1:3626810/1‑71 (MQ=255)
                                  aGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGcc                                   >  1:3378042/1‑71 (MQ=255)
                                   gCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                         <  1:1410719/64‑1 (MQ=255)
                                   gCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCt                                  <  1:935375/71‑1 (MQ=255)
                                     gTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTAt                                >  1:3348821/1‑71 (MQ=255)
                                      tCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCtt                                                       <  1:2927910/47‑1 (MQ=255)
                                        ttAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGa                                                               <  1:3195582/37‑1 (MQ=25)
                                        ttAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCtttt                                                     <  1:1105033/47‑1 (MQ=255)
                                        ttAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCttt                                                      <  1:322503/46‑1 (MQ=255)
                                        ttAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCa                                                >  1:3400758/1‑52 (MQ=255)
                                        ttAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGc                             >  1:2329661/1‑71 (MQ=255)
                                        ttAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGc                             >  1:1768290/1‑71 (MQ=255)
                                         tAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCg                                         <  1:762006/58‑1 (MQ=255)
                                          aaGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCa                                                >  1:2793717/1‑50 (MQ=255)
                                          aaGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATc                               >  1:3703841/1‑67 (MQ=255)
                                          aaGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGcc                            <  1:2506744/70‑1 (MQ=255)
                                          aaGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGcc                            <  1:1040647/70‑1 (MQ=255)
                                          aaGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGc                             <  1:2902847/69‑1 (MQ=255)
                                          aaGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCa                           >  1:2070021/1‑71 (MQ=255)
                                           aGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCAc                          <  1:1185281/71‑1 (MQ=255)
                                           aGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCAc                          >  1:377625/1‑71 (MQ=255)
                                           aGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGAAGCCTATCGCCa                           <  1:1355886/70‑1 (MQ=255)
                                             cTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCg                        <  1:264493/71‑1 (MQ=255)
                                              tGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCgt                       >  1:59118/1‑71 (MQ=255)
                                               ggCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTAt                                >  1:2961108/1‑61 (MQ=255)
                                                gcgcGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACGACCCGGATGCCTATCGCCACCgt                       <  1:660567/69‑1 (MQ=255)
                                                 cgcgAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCgtcgg                    <  1:3538072/71‑1 (MQ=255)
                                                 cgcgAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCgtcgg                    <  1:1630575/71‑1 (MQ=255)
                                                  gcgAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGAt                                      <  1:269576/52‑1 (MQ=255)
                                                     aGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGc                <  1:3526343/71‑1 (MQ=255)
                                                     aGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGc                <  1:2312815/71‑1 (MQ=255)
                                                     aGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGc                <  1:3058503/71‑1 (MQ=255)
                                                      ggACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGc                >  1:862392/1‑70 (MQ=255)
                                                       gACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACGCGGATGCCTATCGCCAGCGTCGGTCGCaa              >  1:1659781/1‑71 (MQ=255)
                                                        aCCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGc                             >  1:1440711/1‑55 (MQ=255)
                                                          cAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGcc                            <  1:2056427/54‑1 (MQ=255)
                                                          cAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCgtcggtcg                 <  1:642853/65‑1 (MQ=255)
                                                          cAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGc                <  1:3480719/66‑1 (MQ=255)
                                                           aaCGTATCAGCCAGGCGAAGCTGCTTTTGAGCaccacc                                           >  1:2136696/1‑38 (MQ=21)
                                                           aaCGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGtt          <  1:2586198/71‑1 (MQ=255)
                                                            aCGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTg         >  1:153768/1‑71 (MQ=255)
                                                            aCGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTg         >  1:227347/1‑71 (MQ=255)
                                                                     |                                                                    
TCTGTCACATCTTTTCCGCCAGCAGTTAGGGATTAGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGA  >  W3110S.gb/71016‑71153

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: