Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 71,214 T→C 93.3% F276F (TTT→TTC araC → DNA‑binding transcriptional dual regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb71,2140TC93.3% 1216.5 / 48.2 389F276F (TTT→TTCaraCDNA‑binding transcriptional dual regulator
Reads supporting (aligned to +/- strand):  ref base T (15/11);  new base C (163/199);  total (179/210)
Fisher's exact test for biased strand distribution p-value = 2.27e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.07e-01

Only 100 of 396 total aligned reads displayed.

GGTTTTGACGATCAACTCTATTTCTCGCGAGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAA  >  W3110S.gb/71146‑71284
                                                                    |                                                                      
ggTTTTGACGATCAACTCTATTTCTCGCGGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCg                                                                      >  1:300862/1‑71 (MQ=255)
ggTTTTGACGATCAACTCTATTTCTCGCGGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCg                                                                      >  1:1751745/1‑71 (MQ=255)
   tttGACGATCAACTCTATTTCTCGCGGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGAGc                                                                   >  1:865993/1‑71 (MQ=255)
        cGATCAACTCTATTTCTCGCGGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGtt                                                              >  1:3360494/1‑71 (MQ=255)
           tCAACTCTATTTCTCGCGAGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTTCGTGCCGGTtgtg                                                           <  1:971058/71‑1 (MQ=255)
            cAACTCTATTTCTCGCGGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTtgtg                                                           >  1:318598/1‑70 (MQ=255)
            cAACTCTATTTCTCGCGAGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTTCGTGCCGGTtgtg                                                           >  1:2172670/1‑70 (MQ=255)
            cAACTCTATTTCTCGCGAGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTTCGTGCCGGTtgtg                                                           >  1:3668377/1‑70 (MQ=255)
            cAACTCTATTTCTAGCGGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTtgtg                                                           >  1:100058/1‑70 (MQ=255)
               ctctATTTCTCGCGGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTgaaga                                                       <  1:491699/71‑1 (MQ=255)
               ctctATTTCTCGCGGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTgaag                                                        >  1:3558226/1‑70 (MQ=255)
                tctATTTCTCGAGGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTgaaga                                                       >  1:2954408/1‑70 (MQ=255)
                    tttCTGGCGGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGaaaa                                                    <  1:1835664/69‑1 (MQ=255)
                    tttCTCGCGGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGaaaa                                                    <  1:1063230/69‑1 (MQ=255)
                    tttCTCGCGGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGaaa                                                     <  1:1325274/68‑1 (MQ=255)
                    tttCTCGCGGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGaaa                                                     <  1:2414495/68‑1 (MQ=255)
                    tttCTCGCGGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGaaa                                                     >  1:1931122/1‑68 (MQ=255)
                     ttCTCGCGGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGt                                                 >  1:2138386/1‑71 (MQ=255)
                     ttCTCGCGAGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGaaa                                                     <  1:1162141/67‑1 (MQ=255)
                      tctcGCGGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGt                                                 >  1:2491768/1‑70 (MQ=255)
                      tctcGCGAGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGt                                                 <  1:713539/70‑1 (MQ=255)
                       ctcGCGGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTg                                                <  1:1572970/70‑1 (MQ=255)
                          gcgGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGa                                               <  1:3586373/68‑1 (MQ=255)
                          gcgGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAatg                                            <  1:2388727/71‑1 (MQ=255)
                          gcgGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAatg                                            <  1:3479688/71‑1 (MQ=255)
                          gcgGGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAat                                             <  1:1292080/70‑1 (MQ=255)
                            gggTATTTAAAAAATGCACCGGGGCCACCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAatgat                                          <  1:811192/69‑1 (MQ=255)
                               tATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGaaaa                                                    <  1:1885760/58‑1 (MQ=255)
                               tATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAatgatg                                         >  1:1089157/1‑69 (MQ=255)
                               tATTTAAAAAATGCAACGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGaaa                                                     <  1:1967065/57‑1 (MQ=255)
                                 tttAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTgaagaa                                                      <  1:1593503/54‑1 (MQ=255)
                                 tttAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGaaaaa                                                   <  1:2226332/57‑1 (MQ=255)
                                 tttAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTTAATGATGTAGc                                     >  1:166511/1‑71 (MQ=255)
                                 tttAAAAAATGCACCCTGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAg                                      <  1:1541710/70‑1 (MQ=255)
                                  ttAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGcc                                    >  1:1246804/1‑71 (MQ=255)
                                   tAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGaaaaa                                                   >  1:65168/1‑55 (MQ=255)
                                   tAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGaaaa                                                    <  1:1634627/54‑1 (MQ=255)
                                   tAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGaa                                              >  1:1511229/1‑60 (MQ=255)
                                   tAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGcc                                    >  1:429062/1‑70 (MQ=255)
                                   tAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCg                                   >  1:3232669/1‑71 (MQ=255)
                                   tAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCg                                   >  1:3030322/1‑71 (MQ=255)
                                   tAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCg                                   >  1:533979/1‑71 (MQ=255)
                                   tAAAAAATGCACAGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTgaa                                                         >  1:465787/1‑49 (MQ=39)
                                    aaaaaaTGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCg                                   >  1:3346275/1‑70 (MQ=255)
                                    aaaaaaTGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGt                                  >  1:3504819/1‑71 (MQ=255)
                                     aaaaaTGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGt                                  >  1:3326511/1‑70 (MQ=255)
                                     aaaaaTGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGt                                  <  1:3105405/70‑1 (MQ=255)
                                     aaaaaTGCACCGGGGCAAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCg                                   >  1:2203821/1‑69 (MQ=255)
                                      aaaaTGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTc                                 >  1:1035926/1‑70 (MQ=255)
                                      aaaaTGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCa                                <  1:1152507/71‑1 (MQ=255)
                                       aaaTGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTc                                 >  1:2111178/1‑69 (MQ=255)
                                       aaaTGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCaa                               <  1:2737303/71‑1 (MQ=255)
                                        aaTGCACCGGGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAg                              <  1:2006906/71‑1 (MQ=255)
                                          tGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGtt                            >  1:2626539/1‑71 (MQ=255)
                                          tGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGtt                            <  1:3539744/71‑1 (MQ=255)
                                          tGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGtt                            >  1:2718936/1‑71 (MQ=255)
                                          tGCACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGtt                            >  1:363987/1‑71 (MQ=255)
                                            cACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTg                           <  1:2994359/70‑1 (MQ=255)
                                            cACCGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGt                          <  1:289002/71‑1 (MQ=255)
                                               cGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCa                        >  1:2315745/1‑70 (MQ=255)
                                               cGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCAt                       <  1:1801616/71‑1 (MQ=255)
                                               cGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCAt                       <  1:3132753/71‑1 (MQ=255)
                                               cGGGGCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCAt                       <  1:2445856/71‑1 (MQ=255)
                                                ggggCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCAt                       >  1:914779/1‑70 (MQ=255)
                                                ggggCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCAt                       >  1:2824200/1‑70 (MQ=255)
                                                ggggCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATa                      <  1:2337006/71‑1 (MQ=255)
                                                ggggCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATa                      <  1:3703921/71‑1 (MQ=255)
                                                ggggCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATa                      <  1:3621785/71‑1 (MQ=255)
                                                 gggCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGaa                                              >  1:1765890/1‑46 (MQ=255)
                                                 gggCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATaa                     <  1:2878649/71‑1 (MQ=255)
                                                 gggCCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATaa                     <  1:27872/71‑1 (MQ=255)
                                                  tgcCAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAa                    <  1:171989‑M1/70‑2 (MQ=255)
                                                    ccAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAa                    <  1:2768030‑M1/69‑2 (MQ=255)
                                                     cAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTg                                                <  1:3077542/40‑1 (MQ=255)
                                                     cAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAaggg                 <  1:1915458‑M1/71‑5 (MQ=255)
                                                     cAGCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAaggg                 <  1:2074175‑M1/71‑5 (MQ=255)
                                                       gCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAatg                                            <  1:3249549/42‑1 (MQ=255)
                                                       gCCCGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAat                                             <  1:766615/41‑1 (MQ=255)
                                                        cccGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAatga                                           >  1:1823570/1‑42 (MQ=255)
                                                        cccGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAatga                                           <  1:3154869/42‑1 (MQ=255)
                                                        cccGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATaa                     <  1:2047462/64‑1 (MQ=255)
                                                        cccGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtcc              >  1:2858912‑M1/1‑64 (MQ=255)
                                                         ccGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCAt                       >  1:1426368/1‑61 (MQ=255)
                                                         ccGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGtt                            >  1:1408210/1‑56 (MQ=255)
                                                         ccGAGCGAGTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAag                   <  1:1267440‑M1/65‑3 (MQ=255)
                                                          cgagcgagTTCCGTGCCGGTTGTGAAGAAAAAGTg                                                <  1:2512399/35‑1 (MQ=255)
                                                          cgagcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGa                                               >  1:777334/1‑36 (MQ=255)
                                                          cgagcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTc                                 <  1:174351/50‑1 (MQ=255)
                                                          cgagcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGtt                            >  1:2602930/1‑55 (MQ=255)
                                                          cgagcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCAt                       >  1:1620130/1‑60 (MQ=255)
                                                          cgagcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccct            <  1:3297282‑M1/71‑10 (MQ=255)
                                                            agcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATa                      <  1:1790350/59‑1 (MQ=255)
                                                             gcgagTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAAt         >  1:2264954/1‑71 (MQ=255)
                                                             gcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAatgatg                                         >  1:1110764/1‑39 (MQ=255)
                                                             gcgagTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGt                          >  1:3075108/1‑54 (MQ=255)
                                                                agTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAAt         >  1:618526/1‑68 (MQ=255)
                                                                agTTCCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAAagggtccctaagtct      <  1:3408935‑M1/71‑16 (MQ=255)
                                                                 gTTTCGTGCCGGTTGTTAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGa     >  1:844741/1‑71 (MQ=255)
                                                                  tttCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGAc    <  1:2689940/71‑1 (MQ=255)
                                                                    tCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCa                                <  1:147285/41‑1 (MQ=255)
                                                                    |                                                                      
GGTTTTGACGATCAACTCTATTTCTCGCGAGTATTTAAAAAATGCACCGGGGCCAGCCCGAGCGAGTTTCGTGCCGGTTGTGAAGAAAAAGTGAATGATGTAGCCGTCAAGTTGTCATAATTGGTAACGAATCAGACAA  >  W3110S.gb/71146‑71284

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: