Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 4,371,273 Δ2 bp 100% intergenic (‑6/+299) dcuA ← / ← aspA C4‑dicarboxylate antiporter/aspartate ammonia‑lyase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb4,371,2730A.100.0% 171.1 / NA 44intergenic (‑6/+300)dcuA/aspAC4‑dicarboxylate antiporter/aspartate ammonia‑lyase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (25/19);  total (25/19)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.
*W3110S.gb4,371,2740A.100.0% 171.1 / NA 44intergenic (‑7/+299)dcuA/aspAC4‑dicarboxylate antiporter/aspartate ammonia‑lyase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (25/19);  total (25/19)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

GGGTTACGGCGCAGCAGCTTTTCTGTCTGATGAACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAGAAAAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGAACGGGATGTTACCGGGTTTAA  >  W3110S.gb/4371203‑4371337
                                                                      ||                                                               
gggTTACGGCGCAGCAGCTTTTCTGTCTGATGAACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAGa                                                                  <  1:826754/71‑1 (MQ=255)
gggTTACGGCGCAGCAGCTTTTCTGTCTGATGAACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAGa                                                                  <  1:263136/71‑1 (MQ=255)
gggTTACGGCGCAGCAGCTTTTCTGTCTGATGAACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAGa                                                                  <  1:2053482/71‑1 (MQ=255)
gggTTACGGCGCAGCAGCTTTTCTGTCTGATGAACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAGa                                                                  <  1:1770575/71‑1 (MQ=255)
gggTTACGGCGCAGCAGCTTTTCTGTCTGATGAACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAGa                                                                  <  1:1647264/71‑1 (MQ=255)
  gTTACGGCGCAGCAGCTTTTCTGTCTGATGAACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAGaaa                                                                <  1:3133002/71‑1 (MQ=255)
            agcagcTTTTCTGTCTGATGAACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGAt                                                    <  1:1089189/71‑1 (MQ=255)
             gcagcTTTTCTGTCTGATGAACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATa                                                   <  1:133989/71‑1 (MQ=255)
              cagcTTTTCTGTCTGATGAACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATaa                                                  >  1:3212793/1‑71 (MQ=255)
                gcTTTTCTGTCTGATGAACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAAcc                                                >  1:638507/1‑71 (MQ=255)
                 cTTTTCTGTCTGATGAACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAGa                                                                  <  1:1642038/54‑1 (MQ=255)
                    ttCTGTCTGATGAACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGc                                              <  1:2481321/69‑1 (MQ=255)
                         tctgATGAACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGAt                                        <  1:3748582/70‑1 (MQ=255)
                             atgaACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATg                                    <  1:2684104/70‑1 (MQ=255)
                                       tAGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATaa                                      >  1:314224/1‑58 (MQ=255)
                                        aGTCCAGACCGCCAGCAACCTGCATGTCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGACAt                          >  1:59993/1‑69 (MQ=255)
                                        aGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGa                                                     >  1:3022911/1‑42 (MQ=38)
                                        aGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAGCCGCCATGATatg                                     >  1:3175804/1‑56 (MQ=255)
                                        aGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGACATc                         >  1:2995399/1‑70 (MQ=255)
                                        aGTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGACATc                         >  1:1465585/1‑70 (MQ=255)
                                         gTCCAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGa                       <  1:2198265/71‑1 (MQ=255)
                                            cAGACCTCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCa                                            >  1:2865810/1‑47 (MQ=37)
                                            cAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCa                                            >  1:3504266/1‑47 (MQ=38)
                                            cAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCa                                            >  1:1510232/1‑47 (MQ=38)
                                            cAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGAACg                    >  1:3315550/1‑71 (MQ=255)
                                            cAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGAACg                    >  1:1110416/1‑71 (MQ=255)
                                            cAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGAACg                    >  1:3099395/1‑71 (MQ=255)
                                            cAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGAACg                    >  1:2873104/1‑71 (MQ=255)
                                            cAGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGAACg                    >  1:2009755/1‑71 (MQ=255)
                                            cAGACCGCCAGCAAACTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGAACg                    >  1:2795932/1‑71 (MQ=255)
                                             aGACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGAt                                        <  1:968651/50‑1 (MQ=255)
                                              gACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCTATAACCGCCATGATAATGGAGATGACATCGAACggg                  <  1:679506/71‑1 (MQ=255)
                                              gACCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGAACggg                  <  1:2249182/71‑1 (MQ=255)
                                               aCCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGc                                              <  1:3012105/42‑1 (MQ=37)
                                               aCCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGc                                              <  1:147687/42‑1 (MQ=37)
                                               aCCGCCAGCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGc                                              <  1:3789563/42‑1 (MQ=37)
                                                      gCAACCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATgg                                   <  1:1121454/46‑1 (MQ=37)
                                                        aaCCTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGAACGGGATGTTACCgg        <  1:952574/71‑1 (MQ=255)
                                                          ccTGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATaa                                      >  1:2690500/1‑39 (MQ=37)
                                                           atGCATGGCAG‑‑AAATAGCGGCGATAACCGCAATGATAATGGAGATGACATCGAACGGGa                 <  1:1692190/58‑1 (MQ=255)
                                                            tGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGAt                                        <  1:3016405/35‑1 (MQ=25)
                                                            tGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGAt                                        <  1:2403415/35‑1 (MQ=25)
                                                            tGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGaa                      >  1:2808238/1‑53 (MQ=255)
                                                            tGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGAACGGGATGTTACCGGGtt     >  1:433731/1‑70 (MQ=255)
                                                            tGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGAACGGGATGTTACCGGGtt     >  1:2003597/1‑70 (MQ=255)
                                                            tGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGAACGGGATGTTACCGGGtt     >  1:3566944/1‑70 (MQ=255)
                                                            tGCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGAACGGGATGTTACCGGGtt     >  1:746626/1‑70 (MQ=255)
                                                             gCATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGAACGGGATGTTAc           >  1:3036725/1‑63 (MQ=255)
                                                              cATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGa                             >  1:2309654/1‑44 (MQ=38)
                                                              cATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGAACGGGATGTTACCGGGttt    <  1:580617/69‑1 (MQ=255)
                                                              cATGGCAG‑‑AAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGAACGGGATGTTACCGGGTTTaa  <  1:592686/71‑1 (MQ=255)
                                                                      ||                                                               
GGGTTACGGCGCAGCAGCTTTTCTGTCTGATGAACCAGATAGTCCAGACCGCCAGCAACCTGCATGGCAGAAAAATAGCGGCGATAACCGCCATGATAATGGAGATGACATCGAACGGGATGTTACCGGGTTTAA  >  W3110S.gb/4371203‑4371337

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: