| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 236798 | 28 (0.700) | 254 (13.850) +TTTAATATCAGTAAACCGGACATAACC |
50/46 | NT | 94.2% | coding (732/732 nt) | dnaQ | DNA polymerase III epsilon subunit |
| ? | W3110S.gb | 4124504 = | 40 (1.000) | intergenic (+106/‑1) | damX/dam | hypothetical protein/DNA adenine methylase | |||||
Only 100 of 940 total aligned reads displayed.
GATTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/236729‑236798‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACGG > W3110S.gb/4124504‑4124573 ||||||||||||||||||||||||||| TTGCAGCTCATGAAGCCCGTCTCTATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTT < 1:2652276/71‑1 TTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTT < 1:2609088/71‑1 TTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATT > 1:2668724/1‑70 TGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTT > 1:3503421/1‑70 TGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTT > 1:2068139/1‑70 GCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTA > 1:1587115/1‑70 GCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAT > 1:1554337/1‑67 GCAGCTCATGAAGCCCGTCTCGATCCGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAA > 1:3261707/1‑71 CAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAAT < 1:1889393/71‑1 AGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATA < 1:3360940/71‑1 GCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATAT < 1:2188305/71‑1 GCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATAT < 1:689025/71‑1 CTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATAT < 1:1943120/70‑1 CTCATGAAGCCCGTCTAGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAA < 1:1714956/67‑1 CATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAG > 1:1498396/1‑71 ATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCA < 1:3787370/69‑1 ttAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTA < 1:3075791/69‑1 GAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTA > 1:3010882/1‑70 AAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAA > 1:3397818/1‑71 AAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAA < 1:1201614/70‑1 AAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTA < 1:1657148/69‑1 GCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACC > 1:3723281/1‑71 GTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAA > 1:1778443/1‑55 CTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACA > 1:435886/1‑70 CTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACA > 1:3336668/1‑70 TCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACAT > 1:3691182/1‑70 TCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACAT > 1:2853361/1‑70 TCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACAT > 1:1609450/1‑70 TCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATA > 1:1379716/1‑54 TCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAA > 1:535492/1‑52 GATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAAC > 1:2692823/1‑71 GATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGG < 1:3444412/64‑1 GATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAA > 1:2414958/1‑50 CTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCA > 1:3235686/1‑71 CTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCA > 1:2469128/1‑52 TGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCAT > 1:1328074/1‑71 TGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATA < 1:3159005/65‑1 GTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACC < 1:1173810/66‑1 CAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAG > 1:2357662/1‑70 CAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAA > 1:2307646/1‑41 AAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAA > 1:1845245/1‑38 AGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAA < 1:239693/71‑1 AGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAA < 1:3859139/71‑1 AGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAA < 1:2752702/71‑1 AGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTA < 1:271164/36‑1 GAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAAT > 1:2142558/1‑71 GAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGG < 1:2108697/50‑1 AAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATC > 1:1287340/1‑71 AAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCG > 1:880126/1‑71 GAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTT < 1:3038723/71‑1 AGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTT > 1:359753/1‑71 GTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCG > 1:2814837/1‑38 TTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTG < 1:1736989/71‑1 TTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTG < 1:1421979/71‑1 TTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTG < 1:3747523/71‑1 TGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTG < 1:1629206/70‑1 TGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTG > 1:750029/1‑70 TGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTG < 1:2572011/70‑1 gaCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGA < 1:1126024/68‑1 GCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAA > 1:2233913/1‑56 GCCTCTGCCGAGCATAATTTAATATCAGTAAACCGGACTTAACCCATGAAGAAAAATCc > 1:475544/1‑58 CCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAG < 1:911851/71‑1 TCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAA < 1:1403059/51‑1 CTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGG > 1:3646579/1‑71 TGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGT < 1:2262980/68‑1 GGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGA < 1:41586/64‑1 GCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCA < 1:2436540/71‑1 AGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAA < 1:3560327/44‑1 ATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGC < 1:3106613/71‑1 TAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTG < 1:1451864/55‑1 ATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAA > 1:3819185/1‑55 ATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAAT‑‑CGCTTTTTTGAAGTGGGCAGGGGGCAAGTA > 1:2036760/1‑71 TTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGT < 1:1000401/71‑1 TTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATC > 1:2548137/1‑41 TTTAATATCAGTAAACCGGACATAACCCATGAAGAAAA < 1:338505/38‑1 TTTAATATCAGTAAACCGGACATAACCCATGAAGAAA < 1:579046/37‑1 TAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTAT > 1:2006264/1‑71 TAATATCAGTAAACCGGACATAACCCATGAAGAAAAATC > 1:3529416/1‑39 AATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAG > 1:1058046/1‑52 ATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATC < 1:10182/70‑1 TCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGG > 1:2933058/1‑51 TCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGT > 1:725705/1‑49 AGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGC > 1:506277/1‑71 AGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAG > 1:1982758/1‑46 AAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTT < 1:2900589/70‑1 AACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGA > 1:808582/1‑71 AACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGA > 1:1863763/1‑71 AACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAG > 1:2486891/1‑49 AACCGGACATAACCCATGAAGAAAAATCGCGCTTTTT > 1:1155419/1‑37 GACATAACCCATGAAGAAAAATCGCGCTTTTTTGAA > 1:125432/1‑36 CATAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCA < 1:3181411/41‑1 TAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAA < 1:639892/71‑1 TAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTA < 1:3306676/70‑1 TAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTA < 1:1089547/70‑1 TAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTA < 1:1821045/70‑1 TAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATAT > 1:192366/1‑68 TAACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCA < 1:1977334/39‑1 AACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGG > 1:957162/1‑36 ACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAAC > 1:3669339/1‑71 ACCCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAAC > 1:2781922/1‑71 ||||||||||||||||||||||||||| GATTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/236729‑236798‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACGG > W3110S.gb/4124504‑4124573 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |