New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb 1209367 =11 (0.280)15 (0.550) 11/68 NT 66.0% coding (290/630 nt) ycfK hypothetical protein
?W3110S.gb 1211196 = 8 (0.300)pseudogene (37/537 nt) stfE ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment

CAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/1209450‑1209367
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGC  >  W3110S.gb/1211196‑1211265
                                                                                                                                                          
CAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCT                                                                                     <  1:1651735/71‑1
           GGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACC                                                                          <  1:1455574/71‑1
           GGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACC                                                                          <  1:1562169/71‑1
           GGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAAC                                                                           >  1:2932506/1‑70
            GTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCA                                                                         <  1:3212152/71‑1
            GTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACC                                                                          >  1:3271826/1‑70
            GTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACC                                                                          <  1:3242526/70‑1
              ATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAAC                                                                       >  1:2230367/1‑71
               TAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACG                                                                      >  1:1332679/1‑71
                AGCTCTGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCa                                                                                      <  1:1868282/54‑2
                  CTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTT                                                                   <  1:2187060/71‑1
                     TGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTAT                                                                 >  1:1144273/1‑70
                     TGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTAT                                                                 >  1:2652098/1‑70
                     TGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCA                                                                         <  1:2221270/62‑1
                     TGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAA                                                                            >  1:153263/1‑59
                          CCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAAT                                                           <  1:2499130/71‑1
                           CGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATG                                                          <  1:2739442/71‑1
                            GGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATG                                                          >  1:2008557/1‑70
                                   CCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTT                                                                    <  1:3132896/53‑1
                                    CTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAA                                                 >  1:3111382/1‑71
                                    CTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATG                                                                >  1:3671644/1‑56
                                      AATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAAC                                                                           >  1:294109/1‑43
                                      AATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAA                                                                            >  1:2393225/1‑42
                                          TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCA                                           <  1:2070551/71‑1
                                          TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAG                                             >  1:1282585/1‑69
                                          TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTT                                                                    >  1:2650074/1‑46
                                          TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACG                                                                      >  1:178611/1‑44
                                          TAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAA                                                                            >  1:315112/1‑38
                                            GCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTT                                                                    >  1:695475/1‑44
                                                  GCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTA                                                                  >  1:3434885/1‑40
                                                  GCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTA                                                                  >  1:1414205/1‑40
                                                      CATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATT                               >  1:770213/1‑71
                                                      CATTGAGTTTTCCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATT                               >  1:1385181/1‑71
                                                         TGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCT                            >  1:2381922/1‑71
                                                          GAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATTAAGAAATAACAAGCAAATGGCATCATTCCT                            <  1:2584688/70‑1
                                                               TTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTT                       >  1:393771/1‑70
                                                               TTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTT                       >  1:901810/1‑70
                                                               TTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTT                       >  1:2886656/1‑70
                                                               TTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTT                       >  1:2767557/1‑70
                                                                   TCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCAT                                <  1:943929/57‑1
                                                                   TCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCA                                           <  1:3080390/46‑1
                                                                   TCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCA                                           <  1:40931/46‑1
                                                                   TCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCA                                           <  1:2059682/46‑1
                                                                     CTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCA                                           <  1:2559971/44‑1
                                                                      TTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCAT                                   <  1:3716227/51‑1
                                                                      TTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCAT                                   <  1:3584634/51‑1
                                                                       TCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGG              >  1:145481/1‑71
                                                                       TCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA                  >  1:3440424/1‑67
                                                                        CTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCTTTCCTGCTTTTACCAGGGG              >  1:1365462/1‑70
                                                                        CTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGG              >  1:3644007/1‑70
                                                                           CCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATT          <  1:2888796/71‑1
                                                                           CCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTT                       <  1:2337414/58‑1
                                                                           CCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAA                                          <  1:1861152/39‑1
                                                                           CCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCA                                           <  1:1231265/38‑1
                                                                            CAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCAT                                   <  1:981712/45‑1
                                                                             AAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTA        <  1:3481875/71‑1
                                                                             AAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTT         >  1:774400/1‑70
                                                                             AAACCAACGTTTATGAAAATGAAGAAATAACAAGCA                                           <  1:346821/36‑1
                                                                              AACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTAGCAGGGGGATTTAA       <  1:3734767/71‑1
                                                                                  AACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATG   <  1:2596478/71‑1
                                                                                  AACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACA     >  1:2957817/1‑69
                                                                                  AACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACA     >  1:2265090/1‑69
                                                                                   ACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGC  >  1:3227817/1‑71
                                                                                   ACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGC  >  1:1138575/1‑71
                                                                                                                                                          
CAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/1209450‑1209367
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGC  >  W3110S.gb/1211196‑1211265

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.