| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 4547364 = | 40 (1.000) | 8 (0.240) | 7/82 | NT | 19.3% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | 4547678 = | 34 (1.040) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
TTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAAC > W3110S.gb/4547295‑4547432 | ttAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATT < 1:2569936‑M1/71‑1 (MQ=255)ttAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATT < 1:3552607‑M1/71‑1 (MQ=255) tAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTG > 1:1872996‑M1/1‑71 (MQ=255) tacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacattt > 1:1853505‑M1/68‑69 (MQ=255) aaaaaGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTG < 1:2697284‑M1/70‑1 (MQ=255) cactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTgggg < 1:1257624‑M1/6‑1 (MQ=255) cactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTgggg < 1:1297275‑M1/6‑1 (MQ=255) cactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacacTTgggg < 1:1942791‑M1/6‑1 (MQ=255) ctttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatt > 1:2078899‑M1/64‑64 (MQ=255) tttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCa < 1:3254988‑M1/9‑1 (MQ=255) gagaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATATATACAAGACAATT < 1:2469096‑M1/64‑1 (MQ=255) agagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACt < 1:1809591/71‑1 (MQ=255) tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAAT < 1:1236835‑M1/54‑1 (MQ=255) ttGATTTAACTTATTGATAATAAAGTTAAATAAACAAATAAATACAAGACTAT > 1:608470‑M1/1‑53 (MQ=255) ttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCa > 1:505545/1‑70 (MQ=255) ttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAAT > 1:134402‑M1/1‑53 (MQ=255) tGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCata > 1:3263961/1‑71 (MQ=255) tGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTG > 1:453243‑M1/1‑54 (MQ=255) tGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTG > 1:464791‑M1/1‑54 (MQ=255) acgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCatat > 1:3623727‑M1/51‑71 (MQ=255) acgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCatat > 1:1821702‑M1/51‑71 (MQ=255) aTTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatag < 1:1941325‑M1/71‑14 (MQ=255) aTTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCatat < 1:322652/70‑1 (MQ=255) aTTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCatat > 1:3091962/1‑70 (MQ=255) tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCa < 1:2179846/71‑1 (MQ=255) tAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcataga > 1:1019150‑M1/1‑55 (MQ=255) aCTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaa > 1:3822916/1‑71 (MQ=255) tgactgccaacactgcacagttttcccccaaaagatgaaacatTTgg < 1:101535‑M1/4‑1 (MQ=255) aTTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaataa < 1:497750/70‑1 (MQ=255) aTTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaata < 1:1421846/69‑1 (MQ=255) aTTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAg > 1:463652/1‑71 (MQ=255) aTTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAg > 1:3340489/1‑71 (MQ=255) gATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAAc > 1:1726945/1‑49 (MQ=255) taataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACg > 1:790180/1‑71 (MQ=255) aacactgcacagttttcccccaaaagatgaaacatTTGGGGCCa > 1:1267711‑M1/36‑44 (MQ=255) aataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAAGTGTCCATATCATAAATAAGTTACg > 1:1342072/1‑70 (MQ=255) aataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGt > 1:2115634/1‑66 (MQ=255) taaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaata < 1:476589/61‑1 (MQ=255) aaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAttt > 1:2075362/1‑71 (MQ=255) aaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAttt > 1:3708786/1‑71 (MQ=255) aaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtt < 1:3055752/70‑1 (MQ=255) gcacagttttcccccaaaagatgaaacatTTGGGGCCAACCTGTCCATATCATAAATAAGTTACGt < 1:1217925‑M1/37‑1 (MQ=255) gTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaac > 1:467382‑M1/1‑37 (MQ=255) gTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaata < 1:3259868/57‑1 (MQ=255) gTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAttttt < 1:35702/71‑1 (MQ=255) ttAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCataaataa > 1:1001313/1‑57 (MQ=255) ttAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttttt < 1:3480844/71‑1 (MQ=255) tAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtc > 1:3283490/1‑71 (MQ=255) taaaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttttct > 1:2196905/2‑68 (MQ=255) gttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCa < 1:1073673‑M1/18‑1 (MQ=255) ttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtctc < 1:3474941‑M1/47‑1 (MQ=255) aaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGt < 1:1753850/55‑1 (MQ=255) aaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAttttt < 1:2275875/66‑1 (MQ=255) ttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAg < 1:1954477‑M1/50‑1 (MQ=255) aaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAg < 1:679162/71‑1 (MQ=255) aaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAg > 1:1578994/1‑70 (MQ=255) cAAATAAATTCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCAt < 1:2454950/71‑1 (MQ=255) cccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttt > 1:3116845‑M1/18‑59 (MQ=255) aataaataCAAGACAATTGGGGCCAAACTGTCCATATCataaata < 1:2784878/45‑1 (MQ=255) aataaataCAAGACAATTGGGGCCAAACTGTCCATATCataaata < 1:2338412/45‑1 (MQ=255) caaaagatgaaacatTTGGGGCCAAACTGTCCATATCata > 1:945906‑M1/16‑40 (MQ=255) ataaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaa < 1:1298009/71‑1 (MQ=255) taaataCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatt < 1:1149010‑M1/71‑49 (MQ=255) taaataCAAGACAATTGGGGCCAttttgactcatagagga < 1:3209689‑M1/40‑18 (MQ=255) taaataCAAGACAATTGGGGCCAttttgactcatagagga < 1:1813812‑M1/40‑18 (MQ=255) taaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtt < 1:3432585/54‑1 (MQ=255) aaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttt < 1:2187591/55‑1 (MQ=255) aataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaaa < 1:2885208/70‑1 (MQ=255) ataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGt < 1:3312422/43‑1 (MQ=255) cAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTa < 1:3275107/42‑1 (MQ=255) cAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTa < 1:1157715/42‑1 (MQ=255) aGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaa > 1:2973240/1‑70 (MQ=255) gACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaa < 1:2086486/71‑1 (MQ=255) aaTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaa > 1:959425/1‑59 (MQ=255) aaTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAAc > 1:3718515/1‑71 (MQ=255) aaTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAAc > 1:2345862/1‑71 (MQ=255) aTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaaa < 1:1725155/59‑1 (MQ=255) aTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaaa < 1:593835/59‑1 (MQ=255) aTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAAc > 1:1906653/1‑70 (MQ=255) | TTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAAC > W3110S.gb/4547295‑4547432 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |