| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173565 | NA (NA) | 47 (1.180) | 23/100 | NT | 100% | pseudogene (306/2041 nt) pseudogene (306/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | = 3932933 | 0 (0.000) | coding (222/1608 nt) | dppA | dipeptide transporter | |||||
Only 100 of 125 total aligned reads displayed.
CACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTAA > W3110S.gb/3932864‑3933001 | cACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGt > 1:2375077‑M2/1‑70 (MQ=255)cACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGt > 1:3704291‑M2/1‑70 (MQ=255) aCCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGt < 1:977489‑M2/70‑2 (MQ=255) tgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGTGatt < 1:1399657‑M2/7‑2 (MQ=255) tgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGTGatt < 1:2459026‑M2/7‑2 (MQ=255) tgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaAGTGAt > 1:1450003‑M2/65‑70 (MQ=255) agtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATccc < 1:3311503‑M2/9‑1 (MQ=255) aTGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatgc < 1:1884662‑M2/71‑7 (MQ=255) aTGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcc < 1:956709‑M2/71‑7 (MQ=255) tGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcct > 1:544147‑M2/1‑64 (MQ=255) gACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatccta < 1:1718178‑M2/71‑9 (MQ=255) aCGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctac < 1:2960258‑M2/71‑10 (MQ=255) ctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTc > 1:1224498‑M2/56‑71 (MQ=255) tctTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtga > 1:973400‑M2/1‑57 (MQ=255) tctTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtga > 1:2225650‑M2/1‑57 (MQ=255) ctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGc > 1:1116032‑M2/54‑71 (MQ=255) tgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCt > 1:2776590‑M2/53‑71 (MQ=255) actgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCt < 1:517373‑M2/19‑1 (MQ=255) actgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCt < 1:2810912‑M2/19‑1 (MQ=255) actgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCt < 1:959209‑M2/19‑1 (MQ=255) actgagagtatactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGa < 1:148385‑M2/21‑1 (MQ=255) ctgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaa < 1:3069792‑M2/22‑1 (MQ=255) ctgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaa < 1:3241398‑M2/22‑1 (MQ=255) ccGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa < 1:2358465‑M2/70‑18 (MQ=255) ccGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgta > 1:692357‑M2/1‑53 (MQ=255) ccGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgta > 1:3621378‑M2/1‑53 (MQ=255) ccGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgt > 1:1876521‑M2/1‑53 (MQ=255) gagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGa < 1:3379791‑M2/21‑1 (MQ=255) tCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcc > 1:3469216‑M2/1‑50 (MQ=255) tCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcc > 1:3468468‑M2/1‑50 (MQ=255) agagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAg < 1:3523326‑M2/25‑1 (MQ=255) ccGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatgga < 1:702494‑M2/71‑24 (MQ=255) tttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaa < 1:1326688‑M2/22‑1 (MQ=255) tttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaa < 1:701260‑M2/22‑1 (MQ=255) tttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaa < 1:475312‑M2/22‑1 (MQ=255) tttactcacttagccgcgtgtccactatcgctgggtaagatcAGTGATCCCGGGCCTCGCTGa < 1:1864884‑M2/21‑1 (MQ=255) tactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg > 1:132180‑M2/41‑69 (MQ=255) tactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg > 1:136639‑M2/41‑69 (MQ=255) ttATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa > 1:616405‑M2/1‑43 (MQ=255) ctcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAg > 1:1206430‑M2/39‑63 (MQ=255) ctcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGt < 1:3785035‑M2/33‑1 (MQ=255) cacttagccgcgtgtccactattgctgggtaagatcAGTGATcc > 1:102831‑M2/37‑44 (MQ=255) acttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAg > 1:701159‑M2/36‑71 (MQ=255) tagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGCGAAGTCAGCg > 1:1063783‑M2/33‑70 (MQ=255) agccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg < 1:2139934‑M2/38‑1 (MQ=255) ccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGa < 1:3226891‑M2/42‑1 (MQ=255) cTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagc < 1:2647293‑M2/69‑37 (MQ=255) tGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgag < 1:3721007‑M2/71‑40 (MQ=255) tGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggaca < 1:1453131‑M2/57‑26 (MQ=255) tGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggaca < 1:1276905‑M2/57‑26 (MQ=255) tGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcatacccacgtaatatggaca < 1:2072969‑M2/57‑26 (MQ=255) tGGTTGAATTTAAAATCGGCACCACCGAAGTGtgat < 1:3343833‑M2/36‑5 (MQ=255) tGGTTGAATTTAAAATCGGCACCACCGAAGTGtgat < 1:557037‑M2/36‑5 (MQ=255) gcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGt < 1:2657049‑M2/26‑1 (MQ=255) gTTGAATTTAAAATCGGCACCACCGAAGTGtgatccta < 1:3300384‑M2/38‑9 (MQ=255) ttGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa > 1:1459439‑M2/1‑29 (MQ=255) ttGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa > 1:2313597‑M2/1‑29 (MQ=255) gtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGAGAAGTCAGCGAAGACGGt < 1:2037938‑M2/46‑1 (MQ=255) tGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttc < 1:2468803‑M2/71‑44 (MQ=255) tGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcga < 1:3735326‑M2/66‑39 (MQ=255) tGAATTTAAAATCGGCACCACCGAAGTGtgatccta < 1:2975369‑M2/36‑9 (MQ=255) gAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacac < 1:3250989‑M2/53‑27 (MQ=255) gAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacac < 1:1693423‑M2/53‑27 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaa < 1:2136660‑M2/48‑1 (MQ=255) aaTTTAAAATCGGCACCAACGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttctt < 1:611814‑M2/71‑46 (MQ=255) cactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAc < 1:2013189‑M2/51‑1 (MQ=255) ctattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg < 1:319108‑M2/29‑1 (MQ=255) ctattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg < 1:2533870‑M2/29‑1 (MQ=255) ctattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg < 1:3654670‑M2/38‑1 (MQ=255) ctattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTa < 1:2229327‑M2/47‑1 (MQ=255) ctattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAcc > 1:2457816‑M2/19‑70 (MQ=255) tattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaaa < 1:1213837‑M2/49‑1 (MQ=255) tattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaaa < 1:2925756‑M2/49‑1 (MQ=255) tattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta > 1:1009926‑M2/18‑71 (MQ=255) attgctgggtaagatcAGTGATACCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta > 1:1403222‑M2/17‑70 (MQ=255) aaaTCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgtttt > 1:1109668‑M2/1‑20 (MQ=255) aaaTCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgtttt > 1:1127522‑M2/1‑20 (MQ=255) aaaTCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgtttt > 1:3768957‑M2/1‑20 (MQ=255) aaaTCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgtttt > 1:463638‑M2/1‑20 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCtata > 1:1971047‑M2/16‑71 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCtat < 1:135777‑M2/55‑1 (MQ=255) aTCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaa > 1:2102571‑M2/1‑18 (MQ=255) gctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATAcc > 1:122886‑M2/14‑71 (MQ=255) cGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaag < 1:1009810‑M2/51‑36 (MQ=255) ggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTcc < 1:2442140‑M2/62‑1 (MQ=255) gtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAc < 1:18568‑M2/51‑1 (MQ=255) taagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCa < 1:2651751‑M2/63‑1 (MQ=255) caccGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttcc < 1:1302905‑M2/71‑62 (MQ=255) caccGAAGTGtgatcctacccacgtaatatggacaca < 1:3426833‑M2/37‑28 (MQ=255) caccGAAGTGtgatcctacccacgtaatatggacaca < 1:1140162‑M2/37‑28 (MQ=255) caccGAAGTGtgatcctacccacgtaatatggacaca < 1:3595406‑M2/37‑28 (MQ=255) agatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTa < 1:3615999‑M2/47‑1 (MQ=255) gatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCt > 1:3286186‑M2/5‑70 (MQ=255) tcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGaa < 1:3449530‑M2/40‑1 (MQ=255) tcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCg > 1:2835272‑M2/3‑71 (MQ=255) AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGa > 1:1632338‑M2/1‑42 (MQ=255) AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTa < 1:340005‑M2/71‑1 (MQ=255) tGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAc < 1:2931974/49‑1 (MQ=255) tGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAc < 1:839156/49‑1 (MQ=255) tGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTTCGTaa < 1:1573838/70‑1 (MQ=255) | CACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTAA > W3110S.gb/3932864‑3933001 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |