Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 2,278,280 C→T 11.6% R256R (CGC→CGT yejB → predicted oligopeptide transporter subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb2,278,2800CT11.6% 112.1 / 6.0 43R256R (CGC→CGTyejBpredicted oligopeptide transporter subunit
Reads supporting (aligned to +/- strand):  ref base C (14/24);  new base T (3/2);  total (17/26)
Fisher's exact test for biased strand distribution p-value = 3.69e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

ACAGTGATTGGTGGCTTTGCGGCGCTGACCATGCTGACAAAAAACTCATTCCTTGATGAAGTGCGCAAGCAATACGTGGTGACCGCGCGTGCGAAAGGGGTAAGTGAAAAAAATATTCTCTGGAAACATGTGTT  >  W3110S.gb/2278215‑2278348
                                                                 |                                                                    
aCAGTGATTGGTGGCTTTGCGGCGCTGACCATGCTGACAAAAAACTCATTCCTTGATGAAGTGCgcaagc                                                                  <  1:2628827/70‑1 (MQ=255)
 cAGTGATTGGTGGCTTTGCGGCGCTGACCATGCTGACAAAAAACTCATTCCTTGATGAAGTGCgcaagcaa                                                                <  1:3477699/71‑1 (MQ=255)
 cAGTGATTGGTGGCTTTGCGGCGCTGACCATGCTGACAAAAAACTCATTCCTTGATGAAGTGCgcaagcaa                                                                <  1:1099953/71‑1 (MQ=255)
  aGTGATTGGTGGCTTTGCGGCGCTGACCATGCTGACAAAAAACTCATTCCTTGATGAAGTGCgcaagcaa                                                                >  1:3830516/1‑70 (MQ=255)
  aGTGATTGGTGGCTTTGCGGCGCTGACCATGCTGACAAAAAACTCATTCCTTGATGAAGTGCgcaagcaa                                                                >  1:2202761/1‑70 (MQ=255)
      aTTGGTGGCTTTGCGGCGCTGACCATGCTGACAAAAAACTCATTCCTTGATGAAGTGCGCAAGCAATACgt                                                           <  1:1274841/71‑1 (MQ=255)
        tggtggCTTTGCGGCGCTGACCATGCTGACAAAAAACTCATTCCTTGATGAAGTGCGCAAGCAATACgtgg                                                         >  1:2569503/1‑71 (MQ=255)
          gtggCTTTGCGGCGCTGACCATGCTGACAAAAAACTCATTCCTTGATGAAGTGCGCAAGCAATACgtggt                                                        <  1:1191328/70‑1 (MQ=255)
                 tGCGGCTCTGACCATGCTGACAAAAAACTCATTCCTTGATGAAGTGCGTAAGCAATACGTGGTGACggcac                                                >  1:1743001/1‑69 (MQ=255)
                 tGCGGCGCTGACCATGCTGACAAAAAACTCATTCCTTGATGAAGTGCGCAAGCAATACGTGGTGACcgcgc                                                >  1:54400/1‑71 (MQ=255)
                 tGCGGCGCTGACCATGCTGACAAAAAACTCATTCCTTGATGAAGTGCGCAAGCAATACGTGGTGACcgcgc                                                >  1:2074724/1‑71 (MQ=255)
                 tGCGGCGCTGACCATGCTGACAAAAAACTCATTCCTTGATGAAGTGCGCAAGCAATACGTGGTGACcgc                                                  <  1:1834288/69‑1 (MQ=255)
                       gcTGACCATGCTGACAAAAAACTCATTCCTTGATGAAGTGCGCAAGCAATACGTGGTGACCGCGCGTGCGa                                          <  1:3677959/71‑1 (MQ=255)
                       gcTGACCATGCTGACAAAAAACTCATTCCTTGATGAAGTGCGCAAGCAATACGTGGTGACCGCGCGTGCGa                                          <  1:3588672/71‑1 (MQ=255)
                        cTGACCATGCTGACAAAAAACTCATTCCTTGATGAAGTGCGCAAGCAATACGTGGTGACCGCGCGTGCGaa                                         <  1:1999957/71‑1 (MQ=255)
                         tGACCATGCTGACAAAAAACTCATTCCTTGGTGAAGTGCgcaagc                                                                  <  1:109155/45‑1 (MQ=255)
                          gACCATGCTGACAAAAAACTCATTCCTTGATGAAGTGCGCAAGCAATACGTGGTGACCGCGCGTGCGa                                          >  1:2061874/1‑68 (MQ=255)
                              aTGCTGACAAAAAACTCATTCCTTGATGAAGTGCGCAAGCAATACGTGGTGACCGCGCGTGCGAAAgggg                                    >  1:1258514/1‑70 (MQ=255)
                               tGCTGACAAAAAACTCATTCCTTGATGAAGTGCGCAAGCAATACGTGGTGACCGCGCGTGCGAAAGGGGTa                                  <  1:2319652/71‑1 (MQ=255)
                                 cTGACAAAAAACTCATTCCTTGATGAAGTGCGCAAGCAATACgtggt                                                        <  1:1516480/47‑1 (MQ=255)
                                 cTGACAAAAAACTCATTCCTTGATGAAGTGCGCAAGCAATACGTGGTGACCGCGCGTGCGAAAGGGGTAAg                                <  1:613759/71‑1 (MQ=255)
                                 cTGACAAAAAACTCATTCCTTGATGAAGTGCGCAAGCAATACGTGGTGACCGCGCGTGCGAAAGGGGTAAg                                <  1:300608/71‑1 (MQ=255)
                                 cTGACAAAAAACTCATTCCTTGATGAAGTGCGCAAGCAATACGTCGTGACCGCGCGTGCGAAAGGGGTaa                                 <  1:3712905/70‑1 (MQ=255)
                                    aCAAAAAACTCATTCCTTGATGAAGTGCGCAAGCAATACgtg                                                          <  1:1083354/42‑1 (MQ=255)
                                    aCAAAAAACTCATTCCTTGATGAAGTGCGCAAGCAATACgtg                                                          <  1:1122917/42‑1 (MQ=255)
                                      aaaaaaCTCATTCCTTGATGAAGTGCGCAAGCAATACGTGGTGACCGCGCGTGCGAAAGGGGTaa                                 <  1:553084/65‑1 (MQ=255)
                                      aaaaaaCTCATTCCTTGATGAAGTGCGCAAGCAATACGTGGTGACCGCGCGTGCGAAAGGGGTaa                                 <  1:1591475/65‑1 (MQ=255)
                                       aaaaaCTCATTCCTTGATGATGTGCGCAAGCAATACGTGGTGACCGCGCGTGCGAAAGGGGTaa                                 <  1:1550288/64‑1 (MQ=255)
                                       aaaaaCTCATTCCTTGATGAAGTGCGTAAGCAATACGTGGTGAc                                                     >  1:2575175/1‑44 (MQ=255)
                                       aaaaaCTCATTCCTTGATGAAGTGCGTAAGCAATACGTGGTGAc                                                     >  1:2159265/1‑44 (MQ=255)
                                        aaaaCTCATTCCTTGATGAAGTGCGCAAGCAATACGTGGTGACCGCGCGTGCGAAAGGGGTAAGTGaaaa                          >  1:3546767/1‑70 (MQ=255)
                                         aaaCTCATTCCTTGATGAAGTGCGTAAGCAATACgtggt                                                        <  1:2581585/39‑1 (MQ=255)
                                         aaaCTCATTCCTTGATGAAGTGCGTAAGCAATACgtggt                                                        <  1:3684508/39‑1 (MQ=255)
                                         aaaCTCATTCCTTGATGAAGTGCGCAAGCAATACGTGGTGACcg                                                   >  1:3686075/1‑44 (MQ=255)
                                         aaaCTCATTCCTTGATGAAGTGCGCAAGCAATACGTGGTGACCGCGCGTGCGAAAGGGGTAAGTGaaaaa                         >  1:2934998/1‑70 (MQ=255)
                                         aaaCTCATTCCTTGATGAAGTGCGCAAGCAATACGTGGTGACCGCGCGTGCGAAAGGGGTAAGTGaaaaa                         >  1:1305355/1‑70 (MQ=255)
                                                  ccTTGATGAAGTGCGCAAGCAATACGTGGTGACCGCGCGTGCGAAAGGGGTAAg                                >  1:3493220/1‑54 (MQ=255)
                                                     tgatgaAGTGCGCAAGCAATACGTGGTGACCGCGCGTGCGAAAGGGGTAAGTGAAAAAAATATTCTCTgg             >  1:1580331/1‑70 (MQ=255)
                                                      gatgaAGTGCGCAAGCAATACGTGGTGACCGCGCGTGCGAAAGGGGTAAGTGAAAAAAATATTCTCTGGa            <  1:2488198/70‑1 (MQ=255)
                                                       atgaAGTGCGCAAGCAATACGTGGTGACCGCGCGTGCGAAAGGGGt                                   >  1:567733/1‑46 (MQ=255)
                                                       atgaAGTGCGCAAGCAATACGTGGTGACCGCGCGTGCGAAAGGGGt                                   >  1:995025/1‑46 (MQ=255)
                                                       atgaAGTGCGCAAGCAATACGTGGTGACCGCGCGTGCGAAAGGGGTAAGTGAAAAAAATATTCTCTGGaaa          <  1:3082935/71‑1 (MQ=255)
                                                          aaGTGCGCAAGCAATACGTGGTGACCGCGCGTGCGAAAGGGGTaa                                 >  1:3337994/1‑45 (MQ=255)
                                                          aaGTGCGCAAGCAATACGTGGTGACCGCGCGTGCGAAAGGGGTAAGTGAAAAAAATATTCTCTGGAAACAt       <  1:3303533/71‑1 (MQ=255)
                                                          aaGTGCGCAAGCAATACGTGGTGACCGCGCGTGCGAAAGGGGTAAGTGAAAAAAATATTCTCTGGAAACAt       <  1:1207487/71‑1 (MQ=255)
                                                          aaGTGCGCAAGCAATACGTGGTGACCGCGCGTGCGAAAGGGGTAAGTGAAAAAAATATTCTCTGGAAACAt       <  1:937002/71‑1 (MQ=255)
                                                             tGCGCAAGCAATACGTGGTGACCGCGCGTGCGAAAGGGGTAAGTGAAAAAAATATTCTCTGGaaa          <  1:106711/65‑1 (MQ=255)
                                                             tGCGCAAGCAATACGTGGTGACCGCGCGTGCGAAAGGGGTAAGTGAAAAAAATATTCTCTGGAAACAtgtg    <  1:2035899/71‑1 (MQ=255)
                                                             tGCGCAAGCAATACGTGGTGACCGCGCGTGCGAAAGGGGTAAGTGAAAAAAATATTCTCTGGAAACAtgtg    <  1:919986/71‑1 (MQ=255)
                                                              gcgcAAGCAATACGTGGTGACCGCGCGTGCGAAAGGGGTAAGTGAAAAAAATATTCTCTGGAAACATgtgt   <  1:1062915/71‑1 (MQ=255)
                                                               cgcAAGCAATACGTGGTGACCGCGCGTGCGAAAGGGGTAAGTGAAAAAAATATTCTCTGGAAACATgtgt   <  1:3403199/70‑1 (MQ=255)
                                                               cgcAAGCAATACGTGGTGACCGCGCGTGCGAAAGGGGTAAGTGAAAAAAATATTCTCTGGAAACATgtgt   <  1:3398658/70‑1 (MQ=255)
                                                               cgcAAGCAATACGTGGTGACCGCGCGTGCGAAAGGGGTAAGTGAAAAAAATATTCTCTGGAAACATGTGtt  >  1:2018417/1‑71 (MQ=255)
                                                                 |                                                                    
ACAGTGATTGGTGGCTTTGCGGCGCTGACCATGCTGACAAAAAACTCATTCCTTGATGAAGTGCGCAAGCAATACGTGGTGACCGCGCGTGCGAAAGGGGTAAGTGAAAAAAATATTCTCTGGAAACATGTGTT  >  W3110S.gb/2278215‑2278348

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: