| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | W3110S.gb | 3,452,623 | G→A | 18.0% | G938G (GGC→GGT) | rpoB ← | RNA polymerase, beta subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 3,452,623 | 0 | G | A | 18.0% | 135.2 / 19.9 | 61 | G938G (GGC→GGT) | rpoB | RNA polymerase, beta subunit |
| Reads supporting (aligned to +/- strand): ref base G (23/27); new base A (6/5); total (29/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.43e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GTCTTTCTTCGCCTGTTTGAGCTGCATTTCTTCGATTTCCAGCGCACGTTTGTCTTTTTCTACGCCATCGCGAGTAAAGACCTGAACGTCGATAACCGTACCGGATACACCGTTTGGTACGCGCAGAGAAGA > W3110S.gb/3452560‑3452691 | gTCTTTCTTCGCCTGTTTGAGCTGCATTTCTTCGATTTCCAGCGCACGTTTGTCTTTTTCTACGcc < 1:3447879/66‑1 (MQ=255) cttcGCCTGTTTGAGCTGCATTTCTTCGATTTCCAGCGCACGTTTGTCTTTTTCTACGCCATCGCGAGTa < 1:3237544/70‑1 (MQ=255) cGCCTGTTTGAGCTGCATTTCTTCGATTTCCAGCGCACGTTTGTCTTTTTCTACGCCATCGCGAGTaa < 1:3600717/68‑1 (MQ=255) cGCCTGTTTGAGCTGCATTTCTTCGATTTCCAGCGCACGTTTGTCTTTTTCTACGCCATCGCGAGTaa < 1:2494317/68‑1 (MQ=255) tttGAGCTGCATTTCTTCGATTTCCAGCGCACGTTTGTCTTTTTCTACGCCATcgc < 1:3235395/56‑1 (MQ=255) tttGAGCTGCATTTCTTCGATTTCCAGCGCACGTTTGTCTTTTTCTACGCCATcgc < 1:538909/56‑1 (MQ=255) tttGAGCTGCATTTCTTCGATTTCCAGCGCACGTTTGTCTTTTTCTACGCCATCGCGAGTAAAGACCTGaa > 1:482939/1‑71 (MQ=255) tGAGCTGCATTTCTTCGATTTCCAGCGCACGTTTGTCTTTTTCTACGCCATCGCGAGTAAAGACCTGaa > 1:3288689/1‑69 (MQ=255) tGAGCTGCATTTCTTCGATTTCCAGCGCACGTTTGTCTTTTTCTACGCCATCGCGAGTAAAGACCTGaa > 1:1319389/1‑69 (MQ=255) tGAGCTGCATTTCTTCGATTTCCAGCGCACGTTTGTCTTTTTCTACGCCATCGCGAGTAAAGACCTGAACg > 1:3280061/1‑71 (MQ=255) tGAGCTGCATTTCTTCGATTTCCAGCGCACGTTTGTCTTTTTCTACGCCATCGCGAGTAAAGACCTGAACg > 1:2418783/1‑71 (MQ=255) aGCTGCATTTCTTCGATTTCCAGCGCACGTTTGTCTTTTTCTACGCCATCGCGAGTAAAGACCTGAACGTc < 1:1079724/71‑1 (MQ=255) tGCATTTCTTCGATTTCCAGCGCACGTTTGTCTTTTTCTACGCCATCGCGAGTAAAGCCCTGAACGTCGa > 1:1455295/1‑70 (MQ=255) aTTTCTTCGATTTCCAGCGCACGTTTGTCTTTTTCTACGCCATCGCGAGTAAAGACCTGAACGTCGATAAc < 1:228782/71‑1 (MQ=255) aTTTCTTCGATTTCCAGCGCACGTTTGTCTTTTTATACGCCATCGCGAGTAAAGACCTGAACGTCGATAAc < 1:2197562/71‑1 (MQ=255) tttCTTCGATTTCCAGCGCACGTTTGTCTTTTTCTACGCCATCGCGAGTAAAGACCTGAACGTCGATAAcc > 1:3165029/1‑71 (MQ=255) tcttcGATTTCCAGCGCACGTTTGTCTTTTTCTACGCCATCGCGAGTAAAGACCTGAACGTCGa > 1:3843361/1‑64 (MQ=255) tcttcGATTTCCAGCGCACGTTTGTCTTTTTCTACGCCATCGCGAGTAAAGACCTGAACGTCGAt > 1:86148/1‑65 (MQ=255) cttcGATTTCCAGCGCACGTTTGTCTTTTTCTACGCCATCGCGAGTAAAGACCTGAACGTCGATAACCGTa > 1:1147487/1‑71 (MQ=255) cttcGATTTCCAGCGCACGTTTGTCTTTTTCTACGCCATCGCGAGTAAAGACCTGAACGTCGATAACCGTa > 1:2375164/1‑71 (MQ=255) ttcGATTTCCAGCGCACGTTTGTCTTTTTCTACGCCATCGCGAGTAAAGACCTGAACGTCGATAACCGt < 1:1214315/69‑1 (MQ=255) cGATTTCCAGCGCACGTTTGTCTTTTTCTACGCCATCGCGAGTAAAGACCTGAACGTCGATAACCGTACCg > 1:1152618/1‑71 (MQ=255) gATTTCCAGCGCACGTTTGTCTTTTTCTACGCCATCGCGAGTAAAGACCTGAACGTCGATAACCGTACCg < 1:1337687/70‑1 (MQ=255) tCCAGCGCACGTTTGTCTTTTTCTACGCCATCGCGAGTAAAGACCTGAACGTCGATAACCGTACCGGATa > 1:600337/1‑70 (MQ=255) gcgcACGTTTGTCTTTTTCTACGCCATCGCGAGTAAAGACCTGAACGTCGATAACCGTACCGGATACACCg < 1:946726/71‑1 (MQ=255) gcACGTTTGTCTTTTTCTACGCCATCGCGAGTAAAGACCTGAACGTCGATAACCGTACCGGATACACCGtt < 1:2867510/71‑1 (MQ=255) tcttcgtCTTTTTCTACACCCTCGtttagttgcttctttt < 1:2205785‑M2/38‑17 (MQ=255) tcttcgtCTTTTTCTACACCCTCGtttagttgcttctttt < 1:2962878‑M2/38‑17 (MQ=255) gTTTGTCTTTTTCTACGCCATCGCGAGTAAAGACCTGAACGTCGATAACCGTACCGGATACACCGTTTgg < 1:3086973/70‑1 (MQ=255) ttcGTCTTTTTCTACGCCCTCGtttagttgcttcttt > 1:1918110‑M2/1‑22 (MQ=255) ttcGTCTTTTTCTACACCCTCGtttagttgcttctttttccttcccgctt > 1:3129305‑M2/1‑22 (MQ=255) cgtCTTTTTCTACGCCCTCGtttagttgcttctttttccttcccgct < 1:2880706‑M2/46‑28 (MQ=255) cgtCTTTTTCTACGCCCTCGtttagttgcttctttttccttcc < 1:2965092‑M2/42‑24 (MQ=255) cgtCTTTTTCTACACCCTCGtttagttgcttctttttcc < 1:1306607‑M2/38‑20 (MQ=255) cgtCTTTTTCTACACCCTCGtttagttgcttctttt < 1:69803‑M2/35‑17 (MQ=255) cgtCTTTTTCTACACCCTCGtttagttgcttctttt < 1:2108625‑M2/35‑17 (MQ=255) gTCTTTTTCTACGCCATCGCGAGTAAAGACCTGAACGTCGATAACCGTACCGGATaca < 1:3765510/58‑1 (MQ=255) gTCTTTTTCTACACCCTCGtttagttgcttctttttccttcccgctt > 1:2640136‑M2/1‑19 (MQ=255) gTCTTTTTCTACACCCTCGtttagttgcttctttttccttcccgctt > 1:2122780‑M2/1‑19 (MQ=255) tttttCTACGCCCTCGtttagttgcttctttttcctt > 1:1261739‑M2/1‑16 (MQ=255) tttttCTACGCCATCGCGAGTAAAGACCTGAACGTCGATAACCGTACCGGa < 1:567601/51‑1 (MQ=255) tttttCTACGCCATCGCGAGTAAAGACCTGAACGTCGATAACCGTACCGGa < 1:2201268/51‑1 (MQ=255) tttttCTACGCCATCGCGAGTAAAGACCTGAACGTCGATAACCGTACCGGATACACCGTTTGGTAcgcg > 1:1585854/1‑69 (MQ=255) tttttCTACACCCTCGtttagttgcttctttttccttccc > 1:1389286‑M2/1‑16 (MQ=255) tttttCTACACCCTCGtttagttgcttctttttcct > 1:2048913‑M2/1‑16 (MQ=255) tttttCTACACCCTCGtttagttgcttctttttcct > 1:609077‑M2/1‑16 (MQ=255) ttttCTACGCCATCGCGAGTAAAGACCTGAACGTCGATAACCGTACCGGATACACCGTTTGGTAcgcg > 1:2854008/1‑68 (MQ=255) tttCTACGCCATCGCGAGTAAAGACCTGAACGTCGATAAc > 1:2702545/1‑40 (MQ=255) tttCTACGCCATCGCGAGTAAAGACCTGAACGTCGATAAc > 1:2006435/1‑40 (MQ=255) tttCTACGCCATCGCGAGTAAAGACCTGAACGTCGATAACCGTACCGGATa > 1:1125595/1‑51 (MQ=255) tttCTACGCCATCGCGAGTAAAGACCTGAACGTCGATAACCGTACCGGATACACCGTTTGGTACGCGCa > 1:325427/1‑69 (MQ=255) ttCTACGCCATCGCGAGTAAAGACCTGAACGTCGATAACCGTACCGGATACACCGTTTGGTACGCGCa > 1:3273889/1‑68 (MQ=255) tCTACGCCATCGCGAGTAAAGACCTGAACGTCGATAACCGTACCGGATACACCGTTTGGTACGCGCagag < 1:2728598/70‑1 (MQ=255) tCTACGCCATCGCGAGTAAAGACCTGAACGTCGATAACCGTACCGGATACACCGTTTGGTACGCGCagag < 1:2555328/70‑1 (MQ=255) cTACGCCATCGCGAGTAAAGACCTGAACGTCGATAACCGTACCGGATACACCGTTTGGTACGCGCagag < 1:1503802/69‑1 (MQ=255) cGCCGTCGCGAGTAAAGACCTGAACGTCGATAACCGTACCGGATACACCGTTTGGTACGCGCAGagaa < 1:1623377/68‑1 (MQ=255) cGCCATCGCTAGTAAAGACCTGAACGTCGATAACCGTACCGGATACACCGTTTGGTACGCGCAGagaa < 1:291891/68‑1 (MQ=255) cGCCATCGCGAGTAAAGACCTGAACGTCGATAACCGTACCGGATACACCGtt < 1:2667838/52‑1 (MQ=255) cGCCATCGCGAGTAAAGACCTGAACGTCGATAACCGTACCGGATACACCGTTTGGTACGCGCAGagaaga < 1:3509265/70‑1 (MQ=255) cGCCATCGCGAGTAAAGACCTGAACGTCGATAACCGTACCGGATACACCGTTTGGTACGCGCAGagaag > 1:1759745/1‑69 (MQ=255) cGCCATCGCGAGTAAAGACCTGAACGTCGATAACCGTACCGGATACACCGTTTGGTACGCGCAGagaa < 1:1210480/68‑1 (MQ=255) | GTCTTTCTTCGCCTGTTTGAGCTGCATTTCTTCGATTTCCAGCGCACGTTTGTCTTTTTCTACGCCATCGCGAGTAAAGACCTGAACGTCGATAACCGTACCGGATACACCGTTTGGTACGCGCAGAGAAGA > W3110S.gb/3452560‑3452691 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |