Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 3,993,747 C→T 9.1% E124E (GAG→GAA gor ← glutathione oxidoreductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb3,993,7470CT 9.1% 184.5 / 6.8 66E124E (GAG→GAAgorglutathione oxidoreductase
Reads supporting (aligned to +/- strand):  ref base C (27/33);  new base T (4/2);  total (31/35)
Fisher's exact test for biased strand distribution p-value = 4.08e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.46e-01

TCCGGGTGGCTCGGACGACCGCCTGTGGCGATCAGAATATGATCGGCCGTGATGGTTTCGCCGTTTACCTCCAGCGTTTTGGCATCAACGAAGCGGGCAAAGCCTTTGATTACATCAACGTTATTTTTACC  >  W3110S.gb/3993679‑3993809
                                                                    |                                                              
tCCGGGTGGCTCGGACGACCGCCTGTGGCGATCAGAATATGATCGGCCGTGATGGTTTCGCCGTTTACCTc                                                              >  1:3257550/1‑71 (MQ=255)
     gTGGCTCGGACGACCGCCTGTGGCGATCAGAATATGATCGGCCGTGATGGTTTCGCCGTTTACCTCCAGCg                                                         <  1:2425616/71‑1 (MQ=255)
     gTGGCTCGGACGACCGCCTGTGGCGATCAGAATATGATCGGCCGTGATGGTTTCGCCGTTTACCTCCAGCg                                                         <  1:1938193/71‑1 (MQ=255)
       ggCTCGGACGACCGCCTGTGGCGATCAGAATATGATCGGCCGTGATGGTTTCGCCGTTTACCTCCAGCGtt                                                       >  1:800332/1‑71 (MQ=255)
        gCTCGGACGACCGCCTGTGGCGATCAGAATATGATCGGCCGTGATGGTTTCGCCGTTTACCTCCAGCGttt                                                      >  1:3550524/1‑71 (MQ=255)
         cTCGGACGACCGCCTGTGGCGATCAGAATATGATCGGCCGTGATGGTTTCGCCGTTTACCTCCAGCGtttt                                                     <  1:1437645/71‑1 (MQ=255)
            ggACGACCGCCTGTGGCGATCAGAATATGATCGGCCGTGATGGTTTCGCCGTTTACCTCCAGCGTTTTgg                                                   <  1:3280775/70‑1 (MQ=255)
               cgacCGCCTGTGGCGATCAGAATATGATCGGCCGTGATGGTTTCGCCGTTTACCTCCAGCGTTTTGGCATc                                               <  1:2171893/71‑1 (MQ=255)
                     ccTGTGGCGATCAGAATATGATCGGCCGTGATGGTTTCGCCGTTTACCTCCAGCGTTTTGGGATCAACg                                           >  1:1097413/1‑69 (MQ=255)
                     ccTGTGGCGATCAGAATATGATCGGCCGTGATGGTTTCGCCGTTTACCTCCAGCGTTTTGGCATCa                                              >  1:2792454/1‑66 (MQ=255)
                     ccTGTGGCGATCAGAATATGATCGGCCGTGATGGTTTCGCCGTTTACCTCCAGCGTTTTGGCATCAACg                                           >  1:627142/1‑69 (MQ=255)
                         tgGCGATCAGAATATGATCGGCCGTGATGGTTTCGCCGTTTACCTCCAGCGTTTTGGCATCAACGAAGCgg                                     >  1:2269917/1‑71 (MQ=255)
                         tgGCGATCAGAATATGATCGGCCGTGATGGTTTCGCCGTTTACCTCCAGCGTTTTGGCATCAACGAAGCgg                                     >  1:3130803/1‑71 (MQ=255)
                         tgGCGATCAGAATATGATCGGCCGTGATGGTTTCGCCGTTTACCTCCAGCGTTTTGGCATCAACGAAGCgg                                     >  1:3135260/1‑71 (MQ=255)
                         tgGCGATCAGAATATGATCGGCCGTGATGGTTTCGCCGTTTACCTCCAGCGTTTTGGCATCAACGAAGCgg                                     >  1:214867/1‑71 (MQ=255)
                          ggCGATCAGAATATGATCGGCCGTGATGGTTTCGCCGTTTACCTCCAGCGTTTTGGCATCAACGAAGCggg                                    >  1:2462541/1‑71 (MQ=255)
                          ggCGATCAGAATATGATCGGCCGTGATGGTTTCGCCGTTTACCTCCAGCGTTTTGGCATCAACGAAGCggg                                    >  1:835196/1‑71 (MQ=255)
                              aTCAGAATATGATCGGCCGTGATGGTTTCGCCGTTGACTTCAATGGTTTTGGCATCAACGAAGCGGGCa                                  >  1:2643558/1‑69 (MQ=255)
                              aTCAGAATATGATCGGCCGTGATGGTTTCGCCGTTGACTTCAATGGTTTTGGCATCAACGAAGCGGGCa                                  >  1:764875/1‑69 (MQ=255)
                              aTCAGAATATGATCGGCCGTGATGGTTTCGCCGTTGACTTCAATGGTTTTGGCATCAACGAAGCGGGCa                                  >  1:1785709/1‑69 (MQ=255)
                              aTCAGAATATGATCGGCCGTGATGGTTTCGCCGTTGACTTCAATGGTTTTGGCATCAACGAAGCGGGCa                                  >  1:1688125/1‑69 (MQ=255)
                                   aaTATGATCGGCCGTTATGGTTTCGCCGTTTACCTCCAGCGTTTTGGCATCAACGAAGCGGGCAAAGCCt                            <  1:551661/70‑1 (MQ=255)
                                    atatGATCGGCCGTGATGGTTTCGCCGTTTACCTCCAGCGTTTTGGCATCAACGAAGCGGGCAAAGCCttt                          >  1:244156/1‑71 (MQ=255)
                                     tatGATCGTCCGTGATGGTTTCGCCGTTTACCTCCAGCGTTTTGGCATc                                               <  1:2048651/49‑1 (MQ=255)
                                     tatGATCGGCCGTGATGGTTTCGCCGTTTACCTCCAGCGtt                                                       <  1:3779571/41‑1 (MQ=255)
                                     tatGATCGGCCGTGATGGTTTCGCCGTTTACCTCCAGCGtt                                                       <  1:1667436/41‑1 (MQ=255)
                                     tatGATCGGCCGTGATGGTTTCGCCGTTTACCTCCAGCGtt                                                       <  1:3678455/41‑1 (MQ=255)
                                     tatGATCGGCCGTGATGGTTTCGCCGTTTACCTCCAGCGTTTTGGCATCAACGAAGCGGGCAAAGCCttt                          <  1:896979/70‑1 (MQ=255)
                                     tatGATCGGCCGTGATGGTTTCGCCGTTTACCTCCAGCGTTTTGGCATCAACGAAGCGGGCAAAGCCttt                          >  1:2489130/1‑70 (MQ=255)
                                     tatGATCGGCCGTGATGGTTTCGCCGTTTACCTCCAGCGTTTTGGCATCAACGAAGCGGGCAAAGCCttt                          <  1:1824488/70‑1 (MQ=255)
                                       tGATCGGCCGTGATGGTTTCGCCGTTTACCTCCAGCGTTTTGGCATCAACGAAGCGGGCAAAGCCTTTGAt                       <  1:1452012/71‑1 (MQ=255)
                                       tGATCGGCCGTGATGGTTTCGCCGTTTACCTCCAGCGTTTTGGCATCAACGAAGCGGGCAAAGCCTTTGAt                       <  1:2998147/71‑1 (MQ=255)
                                       tGATCGGCCGTGATGGTTTCGCCGTTTACCTCCAGCGTTTTGGCATCAACGAAGCGGGCAAAGCCTTTGAt                       <  1:1556449/71‑1 (MQ=255)
                                       tGATCGGCCGTGATGGTTTCGCCGTTTACCTCCAGCGTTTTGGCATCAACGAAGCGGGCAAAGCCTTTGAt                       >  1:3468818/1‑71 (MQ=255)
                                         aTCGGCCGTGATGGTTTCGCCGTTTACCTCCAGCGTTTTGGCATCAACGAAGCGGGCAAAGCCTTTGa                        >  1:3814546/1‑68 (MQ=255)
                                         aTCGGCCGTGATGGTTTCGCCGTTTACCTCCAGCGTTTTGGCATCAACGAAGCGGGCAAAGCCTTTGa                        >  1:377147/1‑68 (MQ=255)
                                         aTCGGCCGTGATGGTTTCGCCGTTTACCTCCAGCGTTTTGGCATCAACGAAGCGGGCAAAGCCTTTGAtt                      >  1:712332/1‑70 (MQ=255)
                                         aTCGGCCGTGATGGTTTCGCCGTTTACCTCCAGCGTTTTGGCATCAACGAAGCGGGCAAAGCCTTTGATTa                     <  1:3051854/71‑1 (MQ=255)
                                         aTCGGCCGTGATGGTTTCGCCGTTGACTTCAATGGTTTTGGCATCAACGAAGCGGGCAAAGCCTTTGAtt                      <  1:54105/70‑1 (MQ=255)
                                         aTCGGCCGTGATGGTTTCGCCGTTGACTTCAATGGTTTTGGCATCAACGAAGCGGGCAAAGCCTTTGAtt                      <  1:848375/70‑1 (MQ=255)
                                           cGGCCGTGATGGTTTCGCCGTTTACCTCCAGCGTTTTGGCATCAACGAAGCGGGCAAAGCCTTTGATTAc                    >  1:2167568/1‑70 (MQ=255)
                                             gCCGTGATGGTTTCGCCGTTTACCTCCAGCGTTTTGGCATCAACGAAGCGGGCAAAGCCTTTGATTACATc                 <  1:725489/71‑1 (MQ=255)
                                             gCCGTGATGGTTTCGCCGTTTACCTCCAGCGTTTTGGCATCAACGAAGCGGGCAAAGCCTTTGATTACATc                 <  1:2182336/71‑1 (MQ=255)
                                                gTGATGGTTTCGCCGTTTACCTCCAGCGTTTTGGCATCAACGaa                                         >  1:3377046/1‑44 (MQ=255)
                                                 tGATGGTTTCGCCGTTTACCTCCAGCGTTTTGGCATCAACGAAGCGGGCAAAGCCTTTGATTa                     <  1:275329/63‑1 (MQ=255)
                                                  gATGGTTTCGCCGTTTACCTCCAGCGTTTTGGCATCAACGAAGCGGGCAAAGCCTTTg                         <  1:1678428/58‑1 (MQ=255)
                                                  gATGGTTTCGCCGTTTACCTCCAGCGTTTTGGCATCAACGAAGCGGGCAAAGCCTTTg                         <  1:1372405/58‑1 (MQ=255)
                                                  gATGGTTTCGCCGTTTACCTCCAGCGTTTTGGCATCAACGAAGCGGGCAAAGCCTTTGATTa                     <  1:1483344/62‑1 (MQ=255)
                                                   aTGGTTTCGCCGTTTACCTCCAGCGTTTTGGCATCAACGAAGCGGGCAAAg                               <  1:1026247/51‑1 (MQ=255)
                                                    tGGTTTCGCCGTTTACCTCCAGCGTTTTGGCATCAACGAAGCGGGCAAAGCCTTTGAt                       >  1:3318011/1‑58 (MQ=255)
                                                      gTTTCGCCGTTTACCTCCAGCGTTTTGGCATCAACGAAGCGGGCa                                  <  1:1444141/45‑1 (MQ=255)
                                                      gTTTCGCCGTTTACCTCCAGCGTTTTGGCATCAACGAAGCGGGCa                                  <  1:314291/45‑1 (MQ=255)
                                                      gTTTCGCCGTTTACCTCCAGCGTTTTGGCATCAACGAAGCGGGCa                                  <  1:2547313/45‑1 (MQ=255)
                                                       tttCGCCGTTTACCTCCAGCGTTTTGGCATCAACGa                                          >  1:3837580/1‑36 (MQ=255)
                                                        ttCGCCGTTTACCTCCAGCGTTTTGGCATCAACGAAGCg                                      >  1:3647604/1‑39 (MQ=255)
                                                        ttCGCCGTTTACCTCCAGCGTTTTGGCATCAACGAAGCg                                      >  1:3110110/1‑39 (MQ=255)
                                                        ttCGCCGTTTACCTCCAGCGTTTTGGCATCAACGAAGCg                                      >  1:601396/1‑39 (MQ=255)
                                                         tCGCCGTTTACCTCCAGCGTTTTGGCATCAACGAAGCGGGCAAAGCCTTTGATTACATCAACGTTAtttt      >  1:2703244/1‑70 (MQ=255)
                                                             cGTTTACCTCCAGCGTTTTGGCATCTACGAAGCTGGCAAAGCCttt                          <  1:645638/46‑1 (MQ=255)
                                                             cGTTTACCTCCAGCGTTTTGGCATCAACGAAGCGGGCAAAGCCttt                          <  1:1411070/46‑1 (MQ=255)
                                                             cGTTTACCTCCAGCGTTTTGGCATCAACGAAGCGGGCAAAGCCttt                          <  1:1829560/46‑1 (MQ=255)
                                                             cGTTTACCTCCAGCGTTTTGGCATCAACGAAGCGGGCAAAGACTTTGATTACATCAACGTTATTTTTAcc  <  1:737883/70‑1 (MQ=255)
                                                              gTTTACCTCCAGCGTTTTGGCATCAACGAAGCGGGCAAAGCCttt                          <  1:1621125/45‑1 (MQ=255)
                                                              gTTTACCTCCAGCGTTTTGGCATCAACGAAGCGGGCAAAGCCTTTGATTACATCAACGTTATTTTTAcc  >  1:551637/1‑69 (MQ=255)
                                                               tttACCTCCAGCGTTTTGTCATCAACGAAGCGGGCAAAGCCttt                          <  1:3343845/44‑1 (MQ=255)
                                                                ttACCTCCAGCGTTTTGGCATCAACGAAGCGGGCAAAGCCttt                          <  1:3172461/43‑1 (MQ=255)
                                                                    |                                                              
TCCGGGTGGCTCGGACGACCGCCTGTGGCGATCAGAATATGATCGGCCGTGATGGTTTCGCCGTTTACCTCCAGCGTTTTGGCATCAACGAAGCGGGCAAAGCCTTTGATTACATCAACGTTATTTTTACC  >  W3110S.gb/3993679‑3993809

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: