Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | W3110S.gb | 4,039,152 | T→C | 9.8% | Y274Y (TAT→TAC) | ftsX → | predicted transporter subunit |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | W3110S.gb | 4,039,152 | 0 | T | C | 9.8% | 131.8 / 5.5 | 51 | Y274Y (TAT→TAC) | ftsX | predicted transporter subunit |
Reads supporting (aligned to +/- strand): ref base T (25/21); new base C (3/2); total (28/23) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.62e-01 |
GCCGTGACTCCATTAACGTACAGAAACTGATTGGTGCGACAGATGGATTCATCCTGCGCCCGTTCCTGTATGGTGGCGCACTGCTGGGATTTTCTGGCGCATTGTTGTCATTAATTTTGTCAGAAATTCTGGTGCTGCGAT > W3110S.gb/4039082‑4039222 | gCCGTGACTCCTTTAACGTACAGAAACTGATTGGTGCGACAGATGGATTCATCCTGCGCCCGTTCCTGTAt < 1:3458469/71‑1 (MQ=255) tGACTCCATTAACGTACAGAAACTGATTGGTGCGACAGATGGATTCATCCTGCGCCCGTTCCTGTAtggtg < 1:864604/71‑1 (MQ=255) tGACTCCATTAACGTACAGAAACTGATTGGTGCGACAGATGGATTCATCCTGCGCCCGTTCCTGTAtggtg < 1:1265403/71‑1 (MQ=255) tGACTCCATTAACGTACAGAAACTGATTGGTGCGACAGATGGATTCATCCTGCGCCCGTTCCTGTAtggtg < 1:374838/71‑1 (MQ=255) aCTCCATTAACGTACAGAAACTGATTGGTGCGACAGATGGATTCATCCTGCGCCCGTTCCTGTATGGTGgc > 1:1662345/1‑71 (MQ=255) aCTCCATTAACGTACAGAAACTGATT‑GTGCGACAGATGGATTCATCCTGCGCCCGTTCCTGTATGGTGgcg > 1:578703/1‑71 (MQ=255) cTCCATTAACGTACAGAAACTGATTGGTGCGACAGATGGATTCATCCTGCGCCCGTTCCTGTATGGTGgcg < 1:1141541/71‑1 (MQ=255) cTCCATTAACGTACAGAAACTGATTGGTGCGACAGATGGATTCATCCTGCGCCCGTTCCTGTATGGTGgcg < 1:2514/71‑1 (MQ=255) cATTAACGTACAGAAACTGATTGGTGCGACAGATGGATTCATCCTGCGCCCGTTCCTGTATGGTGgcgc < 1:2671813/69‑1 (MQ=255) cATTAACGTACAGAAACTGATTGGTGCGACAGATGGATTCATCCTGCGCCCGTTCCTGTATGGTGgcg < 1:3364462/68‑1 (MQ=255) cATTAACGTACAGAAACTGATTGGTGCGACAGATGGATTCATCCTGCGCCCGTTCCTGTATGGTGGCGCAc > 1:575578/1‑71 (MQ=255) cATTAACGTACAGAAACTGATTGGTGCGACAGATGGATTCATCCTGCGCCCGTTCCTGTATGGTGGCGCAc > 1:3248283/1‑71 (MQ=255) tAACGTACAGAAACTGATTGGTGCGACAGATGGATTCATCCTGCGCCCGTTCCTGTATGGTGGCGCActgc > 1:175414/1‑71 (MQ=255) aaCGTACAGAAACTGATTGGTGCGACAGATGGATTCATCCTGCGCCCGTTCCTGTATGGTGGCGCActgct > 1:3694884/1‑71 (MQ=255) aaCGTACAGAAACTGATTGGTGCGACAGATGGATTCATCCTGCGCCCGTTCCTGTATGGTGGCGCActgct > 1:107488/1‑71 (MQ=255) aaCGTACAGAAACTGATTGGTGCGACAGATGGATTCATCCTGCGCCCGTTCCTGTATGGTGGCGCActgct > 1:3367413/1‑71 (MQ=255) aaCGTACAGAAACTGATTGGTGCGACAGATGGATTCATCCTGCGCCCGTTCCTGTATGGTGGCGCActgct > 1:2408800/1‑71 (MQ=255) aaCGTACAGAAACTGATTGGTGCGACAGATGGATTCATCCTGCGCCCGTTCCTGTATGGTGGCGCActgct > 1:1066933/1‑71 (MQ=255) aaCGTACAGAAACTGATTGGTGCGACAGATGGATTCATCCTGCGCCCGTTCCTGTATGGTGGCGCActgct > 1:115484/1‑71 (MQ=255) cAGAAACTGATTGGTGCGACAGATGGATTCATCCTGCGCCCGTTCCTGTATGGTGGCGCACTGCTGGGAtt > 1:3630459/1‑71 (MQ=255) cAGAAAATGATTGGTGCGACAGATGGATTCATCCTGCGCCCGTTCCTGTATGGTGGCGCACTGCTGGGAt < 1:453344/70‑1 (MQ=255) gAAACTGATTGGTGCGACAGATGGATTCATCCTGCGCCCGTTCCTGTATGGTGGCGCACTGCTGGGAtttt > 1:3035174/1‑71 (MQ=255) aaaCTGATTGGTGCGACGGATGGTTTCATCCTGCGCCCGTTCCTGTACGGTGGCGCACTGCTGGGATTTTc < 1:2573403/71‑1 (MQ=255) aaaCTGATTGGTGCGACGGATGGTTTCATCCTGCGCCCGTTCCTGTACGGTGGCGCACTGCTGGGATTTTc < 1:2577846/71‑1 (MQ=255) aaaCTGATTGGTGCGACAGATGGATTCATCCTGCGCCCGTTCCTGTATGGTGGCGCACTGCTGGGATTTTc < 1:2623051/71‑1 (MQ=255) aTTGGTGCGACAGATGGATTCATCCTGCGCCCGTTCCTGTATGGTGGCGCACTGCTGGGATTTTCTGgcg < 1:123055/70‑1 (MQ=255) ggTGCGACAGATGGATTCATCCTGCGCCCGTTCCTGTATGGTGGCGCACTGCTGGGATTTTCTGGCGCAt > 1:3626312/1‑70 (MQ=255) gTGCGACAGATGGATTCATCCTGCGCCCGTTCCTGTATGGTGGCGCACTGCTGGGATTTTCTGGCGCAtt < 1:3664037/70‑1 (MQ=255) gTGCGACAGATGGATTCATCCTGCGCCCGTTCCTGTATGGTGGCGCACTGCTGGGATTTTCTGGCGCAtt < 1:2459387/70‑1 (MQ=255) gTGCGACAGATGGATACATCCTGCGCCCGTTCCTGTATGGTGGCGCACTGCTGGGATTTTCTGGCGCAttg < 1:1923201/71‑1 (MQ=255) cAGATGGATTCATCCTGCGCCCGTTCCTGTATGGTGGCGCa > 1:2154641/1‑41 (MQ=255) cAGATGGATTCATCCTGCGCCCGTTCCTGTATGGTGGCGCa > 1:1771871/1‑41 (MQ=255) cAGATGGATTCATCCTGCGCCCGTTCCTGTATGGTGGCGCa > 1:3613855/1‑41 (MQ=255) aTGGATTCATCCTGCGCCCGTTCCTGTATGGTGGCGCACTGCTGGGATTTTCTGGCGCATTGTTGTCAtt < 1:3524740/70‑1 (MQ=255) gATTCATCCTGCGCCCGTTCCTGTATGGTGGCGCACTGCTGGGATTTTCTGGCGCATTGTTGTCATTAAt < 1:1569887/70‑1 (MQ=255) aTTCATCCTGCGCCCGTTCCTGTATGGTGGCGCACTGCTGGGATTTTCTGGCGCAtt < 1:1907044/57‑1 (MQ=255) ttCATCCTGCGCCCGTTCCTGTATGGTGGCGCACTGCTGGGATTTTCTGGCGCATTGTTGTCATTAAttt > 1:2344117/1‑70 (MQ=255) tCATCCTGCGCCCGTTCCTGTATGGTGGCGCACTGCTGGGATTTTCTGGCGCATTGTTGTCATTAATTTTg > 1:1181389/1‑71 (MQ=255) cATCCTGCGCCCGTTCCTGTATGGTGGCGCACTGCTGGGATTTTCTGGCGCATTGTTGTCATTAAtttt < 1:2129626/69‑1 (MQ=255) cgcCCGTTCCTGTATGGTGGCGCACTGCTGGGATTTTCTGGCGCATTGTTGTCATTAATTTTGTCAGaaa < 1:2609034/70‑1 (MQ=255) cgcCCGTTCCTGTATGGTGGCGCACTGCTGGGATTTTCTGGCGCATTGTTGTCATTAATTTTGTCAGaaa < 1:1320196/70‑1 (MQ=255) gcCCGTTCCTGTATGTTGGCGCACTGCTGGGATTTTCTGGCGCATTGTTGTCATTAATTTTGTCAGAAAtt < 1:2052421/71‑1 (MQ=255) gcCCGTTCCTGTATGGTGGCGCACTGCTGGGATTTTCTGGCGCa > 1:2026032/1‑44 (MQ=255) ccGTTCCTGTATGGTGGCGCACTGCTGGGATTTTCTGGCGCATTGTTGTCATTAATTTTGTCAGAAATTCt < 1:339963/71‑1 (MQ=255) ccGTTCCTGTATGGTGGCGCACTGCTGGGATTTTCTGGCGCATTGTTGTCATTAATTTTGTCAGAAATTCt < 1:2323583/71‑1 (MQ=255) ccTTTATGGTGGCGCACTGCTGGGATTTTCTGGCGCATTGTTGTCATTAATTTTGTCAGAAATTCTGGtgc > 1:2649410/1‑71 (MQ=255) ccTGTATGGTGGCGCACTGCTGGGATTTTCTGGCGCATTGTTGTCATTAATTTTGTCAGaaa > 1:3192790/1‑62 (MQ=255) ccTGTATGGTGGCGCACTGCTGGGATTTTCTGGCGCATTGTTGTCATTAATTTTGTCAGAAATTCTGGtgc > 1:1842012/1‑71 (MQ=255) ccTGTATGGTGGCGCACTGCTGGGATTTTCTGGCGCATTGTTGTCATTAATTTTGTCAGAAATTCTGGtg < 1:3447823/70‑1 (MQ=255) ccTGTATGGTGGCGCACTGCTGGGATTTTCTGGCGCATTGTTGTCATTAATTTTGTCAGAAATTCTGGtg < 1:2661785/70‑1 (MQ=255) cTGTATGGTGGCGCACTGCTGGGATTTTCTGGCGCATTGTTGTCATTAATTTTGTCAGAAATTCTGGtgct > 1:1293824/1‑71 (MQ=255) cTGTACGGTGGCGCACTGCTGGGATTTTCTGgcgc > 1:2607435/1‑35 (MQ=255) cTGTACGGTGGCGCACTGCTGGGATTTTCTGGCGCATTGTTGTCATTAAt > 1:3389047/1‑50 (MQ=255) cTGTACGGTGGCGCACTGCTGGGATTTTCTGGCGCATTGTTGTCATTAAt > 1:3483311/1‑50 (MQ=255) gTATGGTGGCGCACTGCTGGGATTTTCTGGCGCATTGTTGTCATTAATTTTGTCAGAAATTCTGGtgc > 1:639639/1‑68 (MQ=255) tggtggCGCACTGCTGGGATTTTCTGGCGCATTGTTGTCATTAATTTTGTCAGAAATTc < 1:223668/59‑1 (MQ=255) tggtggCGCACTGCTGGGATTTTCTGGCGCATTGTTGTCATTAATTTTGTCAGAAATTc < 1:2676326/59‑1 (MQ=255) tggtggCGCACTGCTGGGATTTTCTGGCGCATTGTTGTCATTAATTTTGTCAGAAATTc < 1:3359678/59‑1 (MQ=255) tggtggCGCACTGCTGGGATTTTCTGGCGCATTGTTGTCATTAATTTTGTCAGAAATTCTg > 1:2661859/1‑61 (MQ=255) tggtggCGCACTGCTGGGATTTTCTGGCGCATTGTTGTCATTAATTTTGTCAGAAATTCTGGTGCTGCGa < 1:1524397/70‑1 (MQ=255) tggtggCGCACTGCTGGGATTTTCTGGCGCATTGTTGTCATTAATTTTGTCAGAAATTCTGGTGCTGCGAt > 1:1214305/1‑71 (MQ=255) | GCCGTGACTCCATTAACGTACAGAAACTGATTGGTGCGACAGATGGATTCATCCTGCGCCCGTTCCTGTATGGTGGCGCACTGCTGGGATTTTCTGGCGCATTGTTGTCATTAATTTTGTCAGAAATTCTGGTGCTGCGAT > W3110S.gb/4039082‑4039222 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |