Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 685,138 C→G 16.4% V180V (GTG→GTC gltL ← glutamate and aspartate transporter subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb685,1380CG16.4% 135.7 / 17.8 61V180V (GTG→GTCgltLglutamate and aspartate transporter subunit
Reads supporting (aligned to +/- strand):  ref base C (19/32);  new base G (5/5);  total (24/37)
Fisher's exact test for biased strand distribution p-value = 4.95e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GCCACTTTACGGGCAAAGCCCATTTCGTGGGTCACCACCATCATGGTCATTCCTTCGTTCGCCAGTTCCACCATCACGTCCAGTACTTCGTTGATCATCTCCGGATCCAGCGCCGATGTCGGTTCGTCAAACAGCATC  >  W3110S.gb/685070‑685207
                                                                    |                                                                     
gCCACTTTACGGGCAAAGCCCATTTCGTGGGTCACCACCATCATGGTCATTCCTTCGTTCGCCAGTTccac                                                                     <  1:2962707/71‑1 (MQ=255)
gCCACTTTACGGGCAAAGCCCATTTCGTGGGTCACCACCATCATGGTCATTCCTTCGTTCGCCAGTTcca                                                                      <  1:2066458/70‑1 (MQ=255)
gCCACTTTACGGGCAAAGCCCATTTCGTGGGTCACCACCATCATGGTCATTCCTTCGTTCGCCAGTTcca                                                                      <  1:2943819/70‑1 (MQ=255)
gCCACTTTACGGGCAAAGCCCATTTCGTGGGTCACCACCATCATGGTCATTCCTTCGTTCGCCAGTTcca                                                                      <  1:134637/70‑1 (MQ=255)
            gCAAAGCCCATTTCGTGGGTCACCACCATCATGGTCATTCCTTCGTTCGCCAGTTCCACCATCACGTCCAg                                                         >  1:819103/1‑71 (MQ=255)
             cAAAGCCCATTTCGTGGGTCACCACCATCATGGTCATTCCTTCGTTCGCCAGTTCCACCATCACGTCCAg                                                         >  1:2279155/1‑70 (MQ=255)
             cAAAGCCCATTTCGTGGGTCACCACCATCATGGTCATTCCTTCGTTCGCCAGTTCCACCATCACGTCCAg                                                         >  1:2929439/1‑70 (MQ=255)
               aaGCCCATTTCGTGGGTCACCACCATCATGGTCATTCCTTCGTTCGCCAGTTCCACCATCACGTCCAGTAc                                                      <  1:1541697/71‑1 (MQ=255)
                   ccATTTCGTGGGTCACCACCATCATGGTCATTCCTTCGTTCGCCAGTTCCACCATCACGTCCAGTACTTCg                                                  >  1:1963109/1‑71 (MQ=255)
                   ccATTTCGTGGGTCACCACCATCATGGTCATTCCTTCGTTCGCCAGTTCCACCATCACGTCCAGTACTTCg                                                  <  1:1457689/71‑1 (MQ=255)
                     aTTTCGTGGGTCACCACCATCATGGTAATTCCTTCGTTCGCCAGTTCCACCATCACGTCCAGTACTTCGtt                                                <  1:976217/71‑1 (MQ=255)
                      tttCGTGGGTCACCACCATCATGGTCATTCCTTCGTTCGCCAGTTCCACCATCACGTCCAGTACtt                                                    <  1:122123/66‑1 (MQ=255)
                        tCGTGGGTCACCACCATCATGGTCATTCCTTCGTTCGCCAGTTCCACCATCACGTCCAGTACTTCGTTGat                                             >  1:3188420/1‑71 (MQ=255)
                         cGTGGGTCACCACCATCATGGTCATTCCTTCGTTCGCCAGTTCCACCATCACGTCCAGTACTTCGTTGat                                             <  1:3387689/70‑1 (MQ=255)
                          gTGGGTCACCACCATCATGGTCATTCCTTCGTTCGCCAGTTCCACCATCACGTCCAGTACTTCGTTGatca                                           <  1:1328897/71‑1 (MQ=255)
                            gggTCACCACCATCATGGTCATTCCTTCGTTCGCCAGTTCCACCATCACGTCCAGTACTTCGTTGatcatc                                         >  1:1178370/1‑71 (MQ=255)
                                caccacCATCATGGTCATTCCTTCGTTCGCCAGTTCCACCATCACGTCCAGTACTTCGTTGATCATCTCCg                                     >  1:2653190/1‑71 (MQ=255)
                                 accaccATCATGGTCATTCCTTCGTTCGCCAGTTCCACCATCACGTc                                                            <  1:1565715/47‑1 (MQ=255)
                                 accaccATCATGGTCATTCCTTCGTTCGCCAGTTCCACCATCACGTc                                                            <  1:1282903/47‑1 (MQ=255)
                                   caccaTCATGGTCATTCCTTCGTTCGCCAGTTCCACCATCACGTCCa                                                          >  1:631294/1‑47 (MQ=255)
                                    accaTCATGGTCATTCCTTCGTTCGCCAGTTCCACCATCACGTCCAGTACTTCGTTGATCATCTCCGGATc                                 <  1:2817364/71‑1 (MQ=255)
                                     ccaTCATGGTCATTCCTTCGTTCGCCAGTTCCACCATc                                                                 <  1:2636018/38‑1 (MQ=255)
                                     ccaTCATGGTCATTCCTTCGTTCGCCAGTTCCACCATCACGTCCAGt                                                        <  1:3299282/47‑1 (MQ=255)
                                     ccaTCATGGTCATTCCTTCGTTCGCCAGTTCCACCATCACGTCCAGt                                                        <  1:3702618/47‑1 (MQ=255)
                                     ccaTCATGGTCATTCCTTCGTTCGCCAGTTCCACCATCACGTCCAGt                                                        <  1:228249/47‑1 (MQ=255)
                                     ccaTCATGGTCATTCCTTCGTTCGCCAGTTCCACCATCACGTCCAGt                                                        <  1:1055531/47‑1 (MQ=255)
                                     ccaTCATGGTCATTCCTTCGTTCGCCAGTTCCACCATCACGTCCAGt                                                        <  1:1011919/47‑1 (MQ=255)
                                     ccaTCATGGTCATTCCTTCGTTCGCCAGTTCCACCATCACGTCCAGt                                                        <  1:1789613/47‑1 (MQ=255)
                                       atcatGGTCATTCCTTCGTTCGCCAGTTCCACCATCACGTc                                                            <  1:907312/41‑1 (MQ=255)
                                       atcatGGTCATTCCTTCGTTCGCCAGTTCCACCATCACGTc                                                            <  1:2522474/41‑1 (MQ=255)
                                       atcatGGTCATTCCTTCGTTCGCCAGTTCCACCATCACGTCCAGTACTTCGTTGATCATCTCCGGATCCAg                              >  1:2054932/1‑71 (MQ=255)
                                        tcatGGTCATTCCTTCGTTCGCCAGTTCCACCATCACGTCCAGTACTTc                                                   <  1:1690963/49‑1 (MQ=255)
                                         catGGTCATTCCTTCGTTCGCCAGTTCCACCATCACGTCCAGTACTTCGTTGATCATCTCCGGATCCAgcg                            >  1:3316477/1‑71 (MQ=255)
                                          atGGTCATTCCTTCGTTCGCCAGTTCCACCATCACGTCCAGTACTTCGt                                                 >  1:3585996/1‑49 (MQ=255)
                                          atGGTCATTCCTTCGTTCGCCAGTTCCACCATCACGTCCAGTACTTCGTTGATCATCTCCg                                     <  1:1146748/61‑1 (MQ=255)
                                          atGGTCATTCCTTCGTTCGCCAGTTCCACCATCACGTCCAGTACTTCGTTGATCATCTCCGGATCCAgcg                            <  1:1963719/70‑1 (MQ=255)
                                          atGGTCATTCCTTCGTTCGCCAGTTCCACCATCACGTCCAGTACTTCGTTGATCATCTCCGGATCCAgcg                            <  1:951119/70‑1 (MQ=255)
                                           tcgTCATTCCTTCGTTCGCCAGTTCGACCATCACGTCCAGCACTTCGTTGATCATCTCCGGATcc                                <  1:2346172/63‑1 (MQ=255)
                                           tcgTCATTCCTTCGTTCGCCAGTTCGACCATCACGTCCAGCACTTCGTTGATCATCTCCGGATcc                                <  1:644860/63‑1 (MQ=255)
                                           tGGTCATTCCTTCGTTCGCCAGTTCCACCATCACGTCCAGTACTTCGTTGatca                                           <  1:1379586/54‑1 (MQ=255)
                                           tGGTCATTCCTTCGTTCGCCAGTTCCACCATCACGTCCAGTACTTCGTTGATCATCTCCGGATCCAGCGcc                          <  1:450179/71‑1 (MQ=255)
                                           tGGTCATTCCTTCGTTCGCCAGTTCCACCATCACGTCCAGTACTTCGTTGATCATCTCCGGATCCAGCGcc                          <  1:740345/71‑1 (MQ=255)
                                              tCATTCCTTCGTTCGCCAGTTCCACCATCACGTCCAGTACTTCGTTGa                                              <  1:3441617/48‑1 (MQ=255)
                                              tCATTCCTTCGTTCGCCAGTTCCACCATCACGTCCAGTACTTCGTTGATAATCTCCGGATCCAGCGCCGAt                       >  1:336401/1‑71 (MQ=255)
                                               cATTCCTTCGTTCGCCAGTTCGACCATCACGTCCAGCACt                                                     >  1:1305430/1‑40 (MQ=37)
                                               cATTCCTTCGTTCGCCAGTTCGACCATCACGTCCAGCACt                                                     >  1:2208273/1‑40 (MQ=37)
                                               cATTCCTTCGTTCGCCAGTTCGACCATCACGTCCAGCACt                                                     >  1:1380837/1‑40 (MQ=37)
                                               cATTCCTTCGTTCGCCAGTTCGACCATCACGTCCAGCACt                                                     >  1:892836/1‑40 (MQ=37)
                                               cATTCCTTCGTTCGCCAGTTCGACCATCACGTCCAGCACt                                                     >  1:2608183/1‑40 (MQ=37)
                                               cATTCCTTCGTTCGCCAGTTCCACCATCACGTCCAGTACTTCGTTGATCATCTCCGGATCCAg                              >  1:2157139/1‑63 (MQ=255)
                                                aTTCCTTCGTTCGCCAGTTCCACCATCACGTCCAGTTCTTCGTTGATCATCTCCGGATCCAGCGCCGATGt                     >  1:3325357/1‑71 (MQ=255)
                                                aTTCCTTCGTTCGCCAGTTCCACCATCACGTCCAGTACTTCGTTGat                                             >  1:1433073/1‑47 (MQ=255)
                                                aTTCCTTCGTTCGCCAGTTCCACCATCACGTCCAGTACTTCGTTGat                                             >  1:87684/1‑47 (MQ=255)
                                                aTTCCTTCGTTCGCCAGTTCCACCATCACGTCCAGTACTTCGTTGATCATCTCCGGATCCAGCGCCGATGt                     <  1:110122/71‑1 (MQ=255)
                                                aTTCCTTCGTTCGCCAGTTCCACCATCACGTCCAGTACTTCGTTGATCATCTCCGGATCCAGCGCCGATGt                     <  1:1932545/71‑1 (MQ=255)
                                                 ttCCTTCGTTCGCCAGTTCGACCATCACGTCCAGCACTTCGTTGATCATCTCCGGATCCa                               <  1:3490244/60‑1 (MQ=255)
                                                 ttCCTTCGTTCGCCAGTTCGACCATCACGTCCAGCACTTCGTTGATCATCTCCGGATCCa                               <  1:1573829/60‑1 (MQ=255)
                                                 ttCCTTCGTTCGCCAGTTCGACCATCACGTCCAGCACTTCGTTGATCATCTCCGGATCCa                               <  1:2242163/60‑1 (MQ=255)
                                                  tCCTTCGTTCGCCAGTTCCACCATCACGTCCAGTACTTCGTTGat                                             >  1:3142916/1‑45 (MQ=255)
                                                   ccTTCGTTCGCCAGTTCCACCATCACGTCCAGTACTTCGTTGATCATCTCCGGATCCAGCGCCGATGTCgg                  >  1:861692/1‑71 (MQ=255)
                                                   ccTTCGTTCGCCAGTTCCACCATCACGTCAAGTAc                                                      >  1:860552/1‑35 (MQ=255)
                                                    cTTCGTTCGCCAGTTCCACCATCACGTCCAGTACTTCGTTGATCATCTCCGGATCCAGCGCCGATGTCgg                  <  1:214484/70‑1 (MQ=255)
                                                     ttcgttcgCCAGTTCCACCATCACGTCCAGTACTTCGTTGatc                                            <  1:17617/43‑1 (MQ=255)
                                                     ttcgttcgCCAGTTCCACCATCACGTCCAGTACTTCGTTGATCATCTCCGGATCCAGCGCCGATGTCGGt                 <  1:1833715/70‑1 (MQ=255)
                                                        gttcgCCAGTTCCACCATCACGTCCAGTACTTCGTTGATCATCTCCGGATCCAGCGCCGATGTCGGTTCGt             <  1:1312514/71‑1 (MQ=255)
                                                                   ccaccaTCACGTCCAGTACTTCGTTGATCATCTCCGGATCCAGCGCCGa                        >  1:300410/1‑49 (MQ=255)
                                                                   ccaccaTCACGTCCAGTACTTCGTTGATCATCTCCGGATCCAGCGCCGATGTCGGTTCGTCAAACAGCATc  >  1:506479/1‑71 (MQ=255)
                                                                   ccaccaTCACGTCCAGTACTTCGTTGATCATCTCCGGATCCAGCGCCGATGTCGGTTCGTCAAACAGCATc  >  1:2890528/1‑71 (MQ=255)
                                                                    |                                                                     
GCCACTTTACGGGCAAAGCCCATTTCGTGGGTCACCACCATCATGGTCATTCCTTCGTTCGCCAGTTCCACCATCACGTCCAGTACTTCGTTGATCATCTCCGGATCCAGCGCCGATGTCGGTTCGTCAAACAGCATC  >  W3110S.gb/685070‑685207

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: