Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 70,740 T→G 93.7% G118G (GGT→GGG araC → DNA‑binding transcriptional dual regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb70,7400TG93.7% 1128.4 / 22.9 349G118G (GGT→GGGaraCDNA‑binding transcriptional dual regulator
Reads supporting (aligned to +/- strand):  ref base T (13/10);  new base G (145/180);  total (159/190)
Fisher's exact test for biased strand distribution p-value = 2.86e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 390 total aligned reads displayed.

GGTTTACTTTCGTCCGCGCGCCTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGTTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGTTTGGGCAAATCATTAACGCCG  >  W3110S.gb/70671‑70807
                                                                     |                                                                   
  tttACTTTCGTCCGCGCGCCTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGgttc                                                                  <  1:3354390/71‑1 (MQ=255)
   ttACTTTCGTCCGCGCGCCTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGgttct                                                                 >  1:3407507/1‑71 (MQ=255)
    tACTTTCGTCCGCGCGCCTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGtttctt                                                                >  1:2720509/1‑71 (MQ=255)
    tACTTTCGTCCGCGCGCCTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGgttctt                                                                >  1:64934/1‑71 (MQ=255)
    tACTTTCGTCCGCGCGCCTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGgttctt                                                                >  1:62029/1‑71 (MQ=255)
    tACTTTCGTCCGCGCGCCTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGgttctt                                                                >  1:1987198/1‑71 (MQ=255)
    tACTTTCGTCCGCGCGCCTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGgttct                                                                 <  1:2412984/70‑1 (MQ=255)
    tACTTTCGTCCGCGCGCCTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGgttct                                                                 <  1:3606080/70‑1 (MQ=255)
    tACTTTCGTCCGCGCGCCTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGgttct                                                                 <  1:3620355/70‑1 (MQ=255)
    tACTTTCGTCCGCGCGCCTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGgttct                                                                 <  1:1734215/70‑1 (MQ=255)
      cTTTCGTCCGCGCGCCTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGgttctttc                                                              <  1:3656438/71‑1 (MQ=255)
      cTTTCGTCCGCGCGCCTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGgttctttc                                                              >  1:73258/1‑71 (MQ=255)
         tCGTCCGCGCGCCTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGGTTCTTTCGcc                                                           >  1:2697736/1‑71 (MQ=255)
         tCGTCCGCGCGCCTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGGTTCTTTCGcc                                                           >  1:3143466/1‑71 (MQ=255)
         tCGTCCGCGCGCCTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGGTTCTTTCGcc                                                           >  1:1789999/1‑71 (MQ=255)
         tCGTCCGCGCGCCTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGGTTCTTTCGcc                                                           >  1:1306584/1‑71 (MQ=255)
         tCGTCCGCGCGCCTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGGTTCTTTCGcc                                                           >  1:1299414/1‑71 (MQ=255)
         tCGTCCGCGCGCCTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGGTTCTTTCGc                                                            <  1:685063/70‑1 (MQ=255)
           gTCCGCGCGCCTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGGTTCTTTCGCCCg                                                         <  1:2048394/71‑1 (MQ=255)
           gTCCGCGCGCCTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGGTTCTTTCGCCCg                                                         <  1:1402914/71‑1 (MQ=255)
           gTCCGCGCGCCTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGGTTCTTTCGCCCg                                                         <  1:3825156/71‑1 (MQ=255)
              cgcgcgCCTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGGTTCTTTCGCCCGGa                                                       <  1:2752732/70‑1 (MQ=255)
                   gcCTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGGTTCTTTCGCCCGGATGAAgc                                                 <  1:2593606/71‑1 (MQ=255)
                     cTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGTTTCTTTCGCCCGGATGAAgcgc                                               <  1:1386586/71‑1 (MQ=255)
                     cTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGGTTCTTTCGCCCGGATGAAgcgc                                               <  1:3697517/71‑1 (MQ=255)
                        cTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCAc                                             >  1:3310676/1‑70 (MQ=255)
                        cTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCAc                                             >  1:2038546/1‑70 (MQ=255)
                          ggCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCACCAg                                          >  1:425585/1‑71 (MQ=255)
                           gCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGTTTCTTTCGCCCGGATGAAGCGCACCAg                                          <  1:3801651/70‑1 (MQ=255)
                           gCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCACCa                                           <  1:853218/69‑1 (MQ=255)
                             aTGAATGGCTTAACTGGCCGTTAATATTTGCCAATACGGGGTTCTTTCGCCCg                                                         <  1:3388892/53‑1 (MQ=255)
                             aTGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGGTTCTTTCGc                                                            >  1:1059024/1‑50 (MQ=255)
                              tGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGtttct                                                                 <  1:914081/44‑1 (MQ=255)
                              tGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGGTTCTTTcgcgcg                                                         <  1:3045205/52‑1 (MQ=255)
                              tGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCACCAGcc                                        <  1:2147299/69‑1 (MQ=255)
                               gAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGgttctt                                                                <  1:3368202/44‑1 (MQ=255)
                               gAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCa                                     >  1:2657487/1‑71 (MQ=255)
                                aaTGGCTTAACTGGCCGTCAATATTTGCCAATACGGGGTTCTTTCGCCCGGATGaa                                                   >  1:955956/1‑56 (MQ=255)
                                aaTGGCTTAACTGGCCGTCAATATTTGCCAATACGGGGTTCTTTCGCCCGGATGa                                                    >  1:239410/1‑55 (MQ=255)
                                aaTGGCTTAACTGGCCGTCAATATTTGCCAATACGGGGTTCTTTCGCCCGGATGa                                                    >  1:3021441/1‑55 (MQ=255)
                                aaTGGCTTAACTGGCCGTCAATATTTGCCAATACGGGGTTCTTTCGCCCGGATGa                                                    >  1:1485669/1‑55 (MQ=255)
                                aaTGGCTTAACTGGCCGTCAATATTTGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCa                                     <  1:2178194/70‑1 (MQ=255)
                                aaTGGCTTAACTGGCCGTCAATATTTGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCAt                                    >  1:1826898/1‑71 (MQ=255)
                                aaTGGCTTAACTGGCCGTCAATATTTGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCAt                                    >  1:2949949/1‑71 (MQ=255)
                                aaTGGCTTAACTGGCCGTCAATATTTGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCAt                                    >  1:814622/1‑71 (MQ=255)
                                aaTGGCTTAACTGGCCGTCAATATTTGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCAt                                    >  1:1867521/1‑71 (MQ=255)
                                aaTGGCTTAACTGGCCGTCAATATTTGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCAt                                    >  1:1921483/1‑71 (MQ=255)
                                  tGGCTTAACTGGCCGTCAATATTTGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCAcc                                            <  1:2000931/61‑1 (MQ=255)
                                    gCTTAACTGGCCGTCAATATTTGCCAATACGGGgttct                                                                 >  1:1188903/1‑38 (MQ=255)
                                    gCTTAACTGGCCGTCAATATTTGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCAcc                                            >  1:1456960/1‑59 (MQ=255)
                                    gCTTAACTGGCCGTCAATATTTGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCa                                <  1:3214390/71‑1 (MQ=255)
                                             gCCGTCAATATTTGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTg                        <  1:517098/70‑1 (MQ=255)
                                             gCCGTCAATATTTGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGt                       <  1:1560512/71‑1 (MQ=255)
                                             gCCGTCAATATTTGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGt                       <  1:3561759/71‑1 (MQ=255)
                                             gCCGTCAATATTTGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGt                       <  1:3679591/71‑1 (MQ=255)
                                             gCCGTCAATATTTGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGt                       >  1:2475301/1‑71 (MQ=255)
                                              ccGTCAATATTTGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGtt                      <  1:2844502/71‑1 (MQ=255)
                                              ccGTCAATATTTGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGtt                      <  1:56408/71‑1 (MQ=255)
                                               cGTCAATATTTGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGttt                     <  1:2784803/71‑1 (MQ=255)
                                               cGTCAATATTTGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGttt                     <  1:3496153/71‑1 (MQ=255)
                                                 tCAATATTTGCCAATACGGGGTTCTTTCGCCCGGATg                                                     <  1:472273/37‑1 (MQ=255)
                                                 tCAATATTTGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCAttt                                  <  1:3541606/56‑1 (MQ=255)
                                                  cAATATTTGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGTTTggg                  >  1:1637394/1‑71 (MQ=255)
                                                   aaTATTTGCCAATACGGGGTTCTTTCGCCCGGATg                                                     <  1:210856/35‑1 (MQ=255)
                                                   aaTATTTGCCAATACGGGGTTCTTTCGCCCGGATGAAGCTCACCAGCCGCATTTCAGCGACCTGTTTggg                  >  1:2031282/1‑70 (MQ=255)
                                                   aaTATTTGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCa                                >  1:1004943/1‑56 (MQ=255)
                                                   aaTATTTGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGtt                      >  1:803375/1‑66 (MQ=255)
                                                   aaTATTTGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGTTTggg                  >  1:1660326/1‑70 (MQ=255)
                                                   aaTATTTGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGTTTggg                  >  1:1513892/1‑70 (MQ=255)
                                                     tatTTGCCAATACGGGGTTCTTTCGCCCGGATGAAgcg                                                <  1:700127/38‑1 (MQ=255)
                                                     tatTTGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCt                         <  1:753365/61‑1 (MQ=255)
                                                     tatTTGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGTTTGGGCaa               <  1:2913135/71‑1 (MQ=255)
                                                     tatTTGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGTTTGGGCa                <  1:1272880/70‑1 (MQ=255)
                                                       tttGCCATTACGGGTTTCTTTCGCCCGGATGAAGCGCACCAGCCGCAttt                                  >  1:1950602/1‑50 (MQ=255)
                                                       tttGCCAATACGGGTTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGTTTGGGCAAAt             <  1:1110505/71‑1 (MQ=255)
                                                       tttGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCa                                              <  1:3186021/38‑1 (MQ=255)
                                                       tttGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGTTTg                    <  1:2452039/64‑1 (MQ=255)
                                                       tttGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGTTTg                    >  1:1356346/1‑64 (MQ=255)
                                                       tttGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGTTTGGGCaaa              >  1:400343/1‑70 (MQ=255)
                                                       tttGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGTTTGGGCAAAt             <  1:3449662/71‑1 (MQ=255)
                                                       tttGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGTTTGGGCAAAt             >  1:1156080/1‑71 (MQ=255)
                                                       tttGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGTTTGGGCAAAt             <  1:2317007/71‑1 (MQ=255)
                                                       tttGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGTTTGGGCAAAt             <  1:810862/71‑1 (MQ=255)
                                                         tGCCAATACGGGTTTCTTTCGCCAGGATGAAGCGCACCAGCCGCATTTCAGCGAcc                          >  1:206618/1‑56 (MQ=255)
                                                         tGCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGa                            >  1:2351246/1‑54 (MQ=255)
                                                          gCCAATACGGGGTTCTTTCGCCCGGATGAAGCGCAACAGCCGCATTTCAGCGACCTGTTTGGGCAAATCa           <  1:2564866/70‑1 (MQ=255)
                                                           ccAATACGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGTTTGGGCAAATCAtt         <  1:2527203/71‑1 (MQ=255)
                                                            cAATACGGGTTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGTTTGGGCAAATCAt          >  1:1437365/1‑69 (MQ=255)
                                                             aaTACGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGTTTGGGCAAATCATTaa       >  1:3110468/1‑71 (MQ=255)
                                                              aTACGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGc                              <  1:2636514/47‑1 (MQ=255)
                                                               tACGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCa                                     <  1:1607233/39‑1 (MQ=255)
                                                                aCGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGTTTGGGCAAATCATTaa       >  1:2880582/1‑68 (MQ=255)
                                                                 cGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGTTTGGGCAAATCATTaa       >  1:2863189/1‑67 (MQ=255)
                                                                 cGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGTTTGGGCAAATCATTAACGcc   >  1:3748845/1‑71 (MQ=255)
                                                                 cGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGTTTGGGCAAATCATTAACGcc   >  1:3168156/1‑71 (MQ=255)
                                                                 cGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGTTTGGGCAAATCATTAACGcc   >  1:2275149/1‑71 (MQ=255)
                                                                 cGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGTTTGGGCAAATCATTAACGcc   >  1:3277370/1‑71 (MQ=255)
                                                                 cGGGGTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGTTTGGGCAAATCATTAACGc    <  1:2217193/70‑1 (MQ=255)
                                                                  ggggTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGttt                     >  1:1234520/1‑52 (MQ=255)
                                                                  ggggTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGTTTGGGCAAATCATTAACGCCg  <  1:1756188/71‑1 (MQ=255)
                                                                     |                                                                   
GGTTTACTTTCGTCCGCGCGCCTACTGGCATGAATGGCTTAACTGGCCGTCAATATTTGCCAATACGGGTTTCTTTCGCCCGGATGAAGCGCACCAGCCGCATTTCAGCGACCTGTTTGGGCAAATCATTAACGCCG  >  W3110S.gb/70671‑70807

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: