| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | W3110S.gb | 797,287 | T→C | 6.9% | S104S (AGT→AGC) | modC → | molybdate transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 797,287 | 0 | T | C | 6.9% | 158.2 / 2.8 | 58 | S104S (AGT→AGC) | modC | molybdate transporter subunit |
| Reads supporting (aligned to +/- strand): ref base T (37/17); new base C (2/2); total (39/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.91e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 | |||||||||||
ATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCGTTTACCAGGCA > W3110S.gb/797226‑797357 | aTGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGAt > 1:1817105/1‑71 (MQ=255) cgcgGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAg > 1:589557/1‑71 (MQ=255) cgcgGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAg > 1:3103079/1‑71 (MQ=255) ttCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGAt < 1:2825009/60‑1 (MQ=255) ttCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGAt > 1:3073810/1‑69 (MQ=255) ttCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGAt > 1:2569692/1‑69 (MQ=255) tCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGa > 1:2984946/1‑67 (MQ=255) tCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGa > 1:1910773/1‑67 (MQ=255) cccGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTa > 1:1441064/1‑50 (MQ=255) cccGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGa > 1:2315662/1‑66 (MQ=255) cccGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATAAGc > 1:365755/1‑71 (MQ=255) cATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATAAGCtggt > 1:896457/1‑71 (MQ=255) cATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATAAGCtggt > 1:788659/1‑71 (MQ=255) ttACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTa < 1:883331/44‑1 (MQ=255) aCAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGgcg > 1:2783228/1‑71 (MQ=255) cAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCa > 1:2474102/1‑51 (MQ=255) cAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCa > 1:657224/1‑51 (MQ=255) cAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGgcgc > 1:527094/1‑71 (MQ=255) aaaGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCt > 1:2802145/1‑71 (MQ=255) aaaGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCt < 1:2756624/71‑1 (MQ=255) aaaGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCt > 1:1818285/1‑71 (MQ=255) aaaGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCt > 1:3657013/1‑71 (MQ=255) aaaGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCt > 1:510117/1‑71 (MQ=255) aGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCa > 1:309441/1‑48 (MQ=255) aGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCttt < 1:3492804/71‑1 (MQ=255) gCGTGGCAATCTGCGCTTCGGCATGTCGAAAAGTATGGTCGAt < 1:3069982/43‑1 (MQ=255) cGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAgg < 1:2921882/71‑1 (MQ=255) cGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAgg < 1:2630556/71‑1 (MQ=255) ggCAATCTGCGCTACGGCATGTCGAAATGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCAt > 1:1116859/1‑71 (MQ=255) gCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCAtt > 1:1776391/1‑71 (MQ=255) aTCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCa > 1:1189607/1‑37 (MQ=255) aTCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATTAGCTGGTGGCGCTTTTAGGCa < 1:2165240/66‑1 (MQ=255) aTCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCa < 1:2193265/66‑1 (MQ=255) aTCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCa < 1:466442/66‑1 (MQ=255) aTCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCa < 1:1255820/66‑1 (MQ=255) tGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATAAGCtgg > 1:1717828/1‑48 (MQ=255) tGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCg > 1:2150709/1‑71 (MQ=255) tGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCg > 1:2140460/1‑71 (MQ=255) tGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCg > 1:1803958/1‑71 (MQ=255) tGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCg > 1:3414509/1‑71 (MQ=255) cgcTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGtt < 1:1553630/71‑1 (MQ=255) cTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGc < 1:3434153/71‑1 (MQ=255) ggCATGGCGAAAAGCATGGTCAATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGa < 1:388158/71‑1 (MQ=255) ggCATGGCGAAAAGCATGGTCAATCAGTTCCATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGa < 1:2750442/71‑1 (MQ=255) gCATGTCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGAc < 1:2378461/71‑1 (MQ=255) aTGGCGAAAAGCATGGTCAATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGATCg > 1:872570/1‑71 (MQ=255) aTGGCGAAAAGCATGGTCAATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGATCg > 1:3509786/1‑71 (MQ=255) gTCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCttt < 1:1546484/44‑1 (MQ=255) tCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCAtt > 1:1661062/1‑51 (MQ=255) gAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTa > 1:269592/1‑43 (MQ=255) gAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAAc > 1:1048220/1‑53 (MQ=255) gAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCGTTTAc < 1:236899/71‑1 (MQ=255) aaaaGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCGTTTAcc < 1:3371696/71‑1 (MQ=255) aaaGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCGTTTAc > 1:2122529/1‑69 (MQ=255) gTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCGTTTa > 1:180352/1‑65 (MQ=255) gTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCGTTTa > 1:3230676/1‑65 (MQ=255) gTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCGTTTa > 1:3104655/1‑65 (MQ=255) gTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCGTTTa > 1:1871120/1‑65 (MQ=255) tATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCGTTTACCAGGCa < 1:1671795/71‑1 (MQ=255) | ATGCGCGGCTGTTCCCGCATTACAAAGTGCGTGGCAATCTGCGCTACGGCATGTCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCGTTTACCAGGCA > W3110S.gb/797226‑797357 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |