Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 902,100 T→G 10.2% T191T (ACA→ACC artQ ← arginine transporter subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb902,1000TG10.2% 105.1 / 8.6 49T191T (ACA→ACCartQarginine transporter subunit
Reads supporting (aligned to +/- strand):  ref base T (23/21);  new base G (2/3);  total (25/24)
Fisher's exact test for biased strand distribution p-value = 6.67e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01

CAGGTAAATCGCCGCCGCCACAATGTACCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCAC  >  W3110S.gb/902034‑902169
                                                                  |                                                                     
cAGGTAAATCGCCGCCGCCACAATGTACCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTtttgttt                                                                   <  1:942034/71‑1 (MQ=255)
   gTAAATCGCCGCCGCCACAATGTACCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTgca                                                                <  1:755954/71‑1 (MQ=255)
          gccgccgccACAATGTACCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTaa                                                         <  1:2713606/71‑1 (MQ=255)
          gccgccgccACAATGTACCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTaa                                                         <  1:1940961/71‑1 (MQ=255)
              ccgccACAATGTACCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCa                                                     <  1:2615381/71‑1 (MQ=255)
                gccACAATGTACCAGGTAAATGGTTCCTGTGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCAtt                                                   <  1:2468955/71‑1 (MQ=255)
                gccACAATGTACCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCAtt                                                   <  1:966925/71‑1 (MQ=255)
                 ccACAATGTACCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCAtt                                                   >  1:2232143/1‑70 (MQ=255)
                  cacaATGTACCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTca                                                 <  1:1218666/71‑1 (MQ=255)
                  cacaATGTACCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTca                                                 >  1:476825/1‑71 (MQ=255)
                    caATGTACCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCAtt                                                           <  1:667131/59‑1 (MQ=255)
                    caATGTACCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCAtt                                                           <  1:800759/59‑1 (MQ=255)
                    caATGTACCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCAtt                                                   <  1:527305/67‑1 (MQ=255)
                      aTGTACCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCacac                                              >  1:1562550/1‑70 (MQ=255)
                      aTGTACCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCacac                                              >  1:818499/1‑70 (MQ=255)
                         tACCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTaa                                           <  1:480340/70‑1 (MQ=255)
                          aCCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTaa                                           <  1:363895/69‑1 (MQ=255)
                            cAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTgcag                                                               <  1:1540743/47‑1 (MQ=255)
                                 aaaTGGTTCGTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCa                                                     >  1:1102900/1‑52 (MQ=255)
                                 aaaTGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTaaa                                                        >  1:285448/1‑49 (MQ=255)
                                 aaaTGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCa                                                     >  1:716496/1‑52 (MQ=255)
                                 aaaTGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCa                                                     >  1:1513603/1‑52 (MQ=255)
                                 aaaTGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCa                                                     >  1:3399732/1‑52 (MQ=255)
                                  aaTGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGAc                                 <  1:2714508/71‑1 (MQ=255)
                                    tGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGAc                                 >  1:905659/1‑69 (MQ=255)
                                      gTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCAtt                                                   >  1:3216895/1‑49 (MQ=255)
                                      gTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAgc                             >  1:1759743/1‑71 (MQ=255)
                                      gTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAgc                             >  1:1413237/1‑71 (MQ=255)
                                      gTTCCTGGGTACGAGTAGAGATGCTTTTTGTTTGCAGCATTAAATCAtt                                                   >  1:3683326/1‑49 (MQ=255)
                                             ggTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGt                        <  1:2010668/69‑1 (MQ=255)
                                             ggTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGt                        <  1:3129712/69‑1 (MQ=255)
                                              gTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATc                     <  1:1854299/71‑1 (MQ=255)
                                                 cGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCttt                  >  1:114654/1‑71 (MQ=255)
                                                    gTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTcag               >  1:1385793/1‑71 (MQ=255)
                                                    gTAGCGATGCTTTTGGTTTGTAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCttt                  >  1:1204518/1‑68 (MQ=255)
                                                    gTAGCGATGCTTTTGGTTTGTAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCttt                  >  1:417044/1‑68 (MQ=255)
                                                     tAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTc                 <  1:1870090/68‑1 (MQ=255)
                                                       gCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTcagcag            >  1:1649883/1‑71 (MQ=255)
                                                         gATGCTTTTGGTTTGTAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTa                       <  1:505298/58‑1 (MQ=255)
                                                         gATGCTTTTGGTTTGTAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTa                       <  1:1374380/58‑1 (MQ=255)
                                                          aTGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCttt                  <  1:754263/62‑1 (MQ=255)
                                                          aTGCTTTTGGTTTGTAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTa                       <  1:484111/57‑1 (MQ=255)
                                                           tGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCa                                        <  1:948074/39‑1 (MQ=255)
                                                            gCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGAc                                 >  1:2681584/1‑45 (MQ=255)
                                                            gCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTca                >  1:1330941/1‑62 (MQ=255)
                                                            gCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTca                >  1:654243/1‑62 (MQ=255)
                                                            gCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTCAgcagca          >  1:2852482/1‑68 (MQ=255)
                                                             cTTTTTGTTTGCAGCATTAAATCATTCACACTAATCaaa                                      >  1:2090742/1‑39 (MQ=255)
                                                             cTTTTTGTTTGCAGCATTAAATCATTCACACTAATCaaa                                      >  1:1498970/1‑39 (MQ=255)
                                                             cTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCa       <  1:1036621/70‑1 (MQ=255)
                                                                tttgtttgCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCa   >  1:3170677/1‑71 (MQ=255)
                                                                 ttgtttgCAGCATTAAATCATTCACACTAATCAAAc                                     >  1:1348844/1‑36 (MQ=255)
                                                                 ttgtttgCAGCATTAAATCATTCACACTAATCAAAc                                     >  1:1865029/1‑36 (MQ=255)
                                                                 ttgtttgCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGacac  >  1:619988/1‑71 (MQ=255)
                                                                 ttgtttgCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCAc  >  1:2105434/1‑71 (MQ=255)
                                                                  |                                                                     
CAGGTAAATCGCCGCCGCCACAATGTACCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCAC  >  W3110S.gb/902034‑902169

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: