| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | W3110S.gb | 902,106 | C→T | 9.2% | L189L (CTG→CTA) | artQ ← | arginine transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 902,106 | 0 | C | T | 9.2% | 151.5 / 4.8 | 54 | L189L (CTG→CTA) | artQ | arginine transporter subunit |
| Reads supporting (aligned to +/- strand): ref base C (28/21); new base T (2/3); total (30/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.46e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.31e-01 | |||||||||||
GTAAATCGCCGCCGCCACAATGTACCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCACTGGTT > W3110S.gb/902037‑902174 | gTAAATCGCCGCCGCCACAATGTACCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTgca < 1:755954/71‑1 (MQ=255) gccgccgccACAATGTACCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTaa < 1:2713606/71‑1 (MQ=255) gccgccgccACAATGTACCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTaa < 1:1940961/71‑1 (MQ=255) ccgccACAATGTACCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCa < 1:2615381/71‑1 (MQ=255) gccACAATGTACCAGGTAAATGGTTCCTGTGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCAtt < 1:2468955/71‑1 (MQ=255) gccACAATGTACCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCAtt < 1:966925/71‑1 (MQ=255) ccACAATGTACCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCAtt > 1:2232143/1‑70 (MQ=255) cacaATGTACCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTca > 1:476825/1‑71 (MQ=255) cacaATGTACCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTca < 1:1218666/71‑1 (MQ=255) caATGTACCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCAtt < 1:667131/59‑1 (MQ=255) caATGTACCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCAtt < 1:800759/59‑1 (MQ=255) caATGTACCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCAtt < 1:527305/67‑1 (MQ=255) aTGTACCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCacac > 1:818499/1‑70 (MQ=255) aTGTACCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCacac > 1:1562550/1‑70 (MQ=255) tACCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTaa < 1:480340/70‑1 (MQ=255) aCCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTaa < 1:363895/69‑1 (MQ=255) cAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTgcag < 1:1540743/47‑1 (MQ=255) aaaTGGTTCGTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCa > 1:1102900/1‑52 (MQ=255) aaaTGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTaaa > 1:285448/1‑49 (MQ=255) aaaTGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCa > 1:3399732/1‑52 (MQ=255) aaaTGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCa > 1:716496/1‑52 (MQ=255) aaaTGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCa > 1:1513603/1‑52 (MQ=255) aaTGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGAc < 1:2714508/71‑1 (MQ=255) tGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGAc > 1:905659/1‑69 (MQ=255) gTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCAtt > 1:3216895/1‑49 (MQ=255) gTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAgc > 1:1413237/1‑71 (MQ=255) gTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAgc > 1:1759743/1‑71 (MQ=255) gTTCCTGGGTACGAGTAGAGATGCTTTTTGTTTGCAGCATTAAATCAtt > 1:3683326/1‑49 (MQ=255) ggTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGt < 1:3129712/69‑1 (MQ=255) ggTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGt < 1:2010668/69‑1 (MQ=255) gTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATc < 1:1854299/71‑1 (MQ=255) cGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCttt > 1:114654/1‑71 (MQ=255) gTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTcag > 1:1385793/1‑71 (MQ=255) gTAGCGATGCTTTTGGTTTGTAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCttt > 1:1204518/1‑68 (MQ=255) gTAGCGATGCTTTTGGTTTGTAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCttt > 1:417044/1‑68 (MQ=255) tAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTc < 1:1870090/68‑1 (MQ=255) gCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTcagcag > 1:1649883/1‑71 (MQ=255) gATGCTTTTGGTTTGTAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTa < 1:505298/58‑1 (MQ=255) gATGCTTTTGGTTTGTAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTa < 1:1374380/58‑1 (MQ=255) aTGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCttt < 1:754263/62‑1 (MQ=255) aTGCTTTTGGTTTGTAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTa < 1:484111/57‑1 (MQ=255) tGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCa < 1:948074/39‑1 (MQ=255) gCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGAc > 1:2681584/1‑45 (MQ=255) gCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTca > 1:1330941/1‑62 (MQ=255) gCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTca > 1:654243/1‑62 (MQ=255) gCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTCAgcagca > 1:2852482/1‑68 (MQ=255) cTTTTTGTTTGCAGCATTAAATCATTCACACTAATCaaa > 1:1498970/1‑39 (MQ=255) cTTTTTGTTTGCAGCATTAAATCATTCACACTAATCaaa > 1:2090742/1‑39 (MQ=255) cTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCa < 1:1036621/70‑1 (MQ=255) tttgtttgCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCa > 1:3170677/1‑71 (MQ=255) ttgtttgCAGCATTAAATCATTCACACTAATCAAAc > 1:1865029/1‑36 (MQ=255) ttgtttgCAGCATTAAATCATTCACACTAATCAAAc > 1:1348844/1‑36 (MQ=255) ttgtttgCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGacac > 1:619988/1‑71 (MQ=255) ttgtttgCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCAc > 1:2105434/1‑71 (MQ=255) gtttgCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCAc < 1:1654557/69‑1 (MQ=255) tgCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTCagcagc < 1:3067919/57‑1 (MQ=255) gcagcaTTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCACTGGtt < 1:749511/70‑1 (MQ=255) gcagcaTTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCACTGGtt < 1:2371435/70‑1 (MQ=255) | GTAAATCGCCGCCGCCACAATGTACCAGGTAAATGGTTCCTGGGTACGAGTAGCGATGCTTTTTGTTTGCAGCATTAAATCATTCACACTAATCAAACTGACCAGCGCGGTATCTTTCAGCAGCACCAGCCACTGGTT > W3110S.gb/902037‑902174 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |