| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | W3110S.gb | 903,018 | T→A | 8.8% | V131V (GTA→GTT) | artI ← | arginine transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 903,018 | 0 | T | A | 8.8% | 147.6 / 6.7 | 57 | V131V (GTA→GTT) | artI | arginine transporter subunit |
| Reads supporting (aligned to +/- strand): ref base T (25/27); new base A (3/2); total (28/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.70e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.70e-01 | |||||||||||
TCATACGGAACGGTAGTGATTTCCGGGTGCTTATCCATAATGAATTTCTGGTGTGTCGTCCCGTTCTGTACGCCGACTTTTTTGCCTTTCAGCTGATCAACACTGGTGTATTTGCCTTGCTGACCCACAAACAGGG > W3110S.gb/902950‑903085 | tCATACGGAACGGTAGTGATTTCCGGGTGCTTATCCATAATGAATTTCTGGTGTGTCGTCCCGTTCTGt < 1:2928947/69‑1 (MQ=255) cGGAACGGTAGTGATTTCCGGGTGCTTATCCATAATGAATTTCTGGTGTGTCGTCCCGTTCTGTACGCCGa > 1:2943163/1‑71 (MQ=255) gAACGGTAGTGATTTCCGGGTGCTTATCCATAATGAATTTCTGGTGTGTCGTCCCGTTCTGTACGCCGACt < 1:274353/71‑1 (MQ=255) gAACGGTAGTGATTTCCGGGTGCTTATCCATAATGAATTTCTGGTGTGTCGTCCCGTTCTGTACGCCGACt < 1:3510077/71‑1 (MQ=255) tGATTTCCGGGTGCTTATCCATAATGAATTTCTGGTGTGTCGTCCCGTTCTGTACGCCGACTTTTTTGCCt < 1:597697/71‑1 (MQ=255) gATTTCCGGGTGCTTATCCATAATGAATTTCTGGTGTGTCGTCCCGTTCTGTACGCCGACttttt > 1:388111/1‑65 (MQ=255) aTTTCCGGGTGCTTATCCATAATGAATTTCTGGTGTGTCGTCCCGTTCTGTACGCCGa > 1:734139/1‑58 (MQ=255) aTTTCCGGGTGCTTATCCATAATGAATTTCTGGTGTGTCGTCCCGTTCTGTACGCCGa > 1:2943061/1‑58 (MQ=255) aTTTCCGGGTGCTTATCCATAATGAATTTCTGGTGTGTCGTCCCGTTCTGTACGCCGa > 1:3655728/1‑58 (MQ=255) ccGGGTGCTTATCCATAATGAATTTCTGGTGTGTCGTCCCGTTCTGTACGCCGACTTTTTTGCCTTTCAg < 1:2214674/70‑1 (MQ=255) cTTATCCATAATGAATTTCTGGTGTGTCGTCCCGTTCTGTACGCCGACTTTTTTGCCTTTCa > 1:927799/1‑62 (MQ=255) aTCCATAATGAATTTCTGGTGTGTCGTCCCGTTCTGTACGCCGACTTTTTTGCCTTTCAGCTGATCAacac > 1:2839261/1‑71 (MQ=255) aTCCATAATGAATTTCTGGTGTGTCGTCCCGTTCTGTACGCCGACTTTTTTGCCTTTCAGCTGATCAaca < 1:365725/70‑1 (MQ=255) aTCCATAATGAATTTCTGGTGTGTCGTCCCGTTCTGTACGCCGACTTTTTTGCCTTTCAGCTGATCAaca < 1:2540612/70‑1 (MQ=255) aTCCATAATGAATTTCTGGTGTGTCGTCCCGTTCTGTACGCCGACTTTTTTGCCTTTCAGCTGATCAaca < 1:2497755/70‑1 (MQ=255) tCCATAATGAATTTCTGGTGTGTCGTCCCGTTCTGTACGCCGACTTTTTTGCCTTTCAGCTGATCAACACt > 1:2233512/1‑71 (MQ=255) tCCATAATGAATTTCTGGTGTGTCGTCCCGTTCTGTACGCCGACTTTTTTGCCTTTCAGCTGATCAACACt > 1:2781520/1‑71 (MQ=255) ccATAATGAATTTCTGGTGTGTCGTCCCGTTCTGTACGCCGACTTTTTTGCCTTTCAGCTGATCAACACTg > 1:3351912/1‑71 (MQ=255) tAATGAATTTCTGGTGTGTCGTCCCGTTCTGTACGCCGACtt < 1:1133135/42‑1 (MQ=255) tAATGAATTTCTGGTGTGTCGTCCCGTTCTGTACGCCGACTTTTTTGCCTTTCAGCTGAt < 1:503161/60‑1 (MQ=255) tAATGAATTTCTGGTGTGTCGTCCCGTTCTGTACGCCGACTTTTTTGCCTTTCAGCTGAt < 1:2714904/60‑1 (MQ=255) tAATGAATTTCTGGTGTGTCGTCCCGTTCTGTACGCCGACTTTTTTGCCTTTCAGCTGAt < 1:2644366/60‑1 (MQ=255) tAATGAATTTCTGGTGTGTCGTCCCGTTCTGTACGCCGACTTTTTTGCCTTTCAGCTGAt < 1:2122638/60‑1 (MQ=255) aTGAATTTCTGGTGTGTCGTCCCGTTCTGTACGCCGa > 1:2836928/1‑37 (MQ=255) tGAACTTCTGGTGTGTCGTCCCGTTCTGAACGCCGACTTTTTTGCCTTTCAGCTGATCAACACTGGTGTAt > 1:663139/1‑71 (MQ=255) tGAACTTCTGGTGTGTCGTCCCGTTCTGAACGCCGACTTTTTTGCCTTTCAGCTGATCAACACTGGTGTAt > 1:608420/1‑71 (MQ=255) aaTTTCTGGTGTGTCGTCCCGTTCTGTACGCCGACttt < 1:1323407/38‑1 (MQ=255) aaTTTCTGGTGTGTCGTCCCGTTCTGTACGCCGACttt < 1:2316231/38‑1 (MQ=255) aTTTCTGGTGTGTCGTCCCGTTCTGTACGCCGACTTTTTTGCCTTTCAg > 1:1699409/1‑49 (MQ=255) tttCTGGTGTGTCGTCCCGTTCTGTACGCCGACTTTTTTGCCTTTCAGCTGATCAACACTGGTGTATTTGc < 1:1397075/71‑1 (MQ=255) tGGTGTGTCGTCCCGTTCTGTACGCCGACTTTTTTGCCTTTCAGCTGATCAaca > 1:2358873/1‑54 (MQ=255) tGGTGTGTCGTCCCGTTCTGTACGCCGACTTTTTTGCCTTTCAGCTGATCAaca > 1:420759/1‑54 (MQ=255) gtgtgtCGTCCCGTTCTGTACGCCGACTTTTTTGCCTTTCAGCTGATCAACACTGGTGTATTTGCCtt < 1:1378651/68‑1 (MQ=255) gtgtgtCGTCCCGTTCTGTACGCCGACTTTTTTGCCTTTCAGCTGATCAACACTGGTGTATTTGCCTTg < 1:1029886/69‑1 (MQ=255) tgtgtCGTCCCGTTCTGTACGCCGACTTTTTTGCCTTTCAGCTGATCAACACTGGTGTATTTGCCTTGCTg < 1:232222/71‑1 (MQ=255) tgtCGTCCCGTTCTGTACGCCGACTTTTTTGCCTTTCa < 1:270415/38‑1 (MQ=255) tgtCGTCCCGTTCTGTACGCCGACTTTTTTGCCTTTCa < 1:2486658/38‑1 (MQ=255) tgtCGTCCCGTTCTGTACGCCGACTTTTTTGCCTTTCa < 1:920217/38‑1 (MQ=255) gtcCCGTTCTGTACGCCGACTTTTTTGCCTTTCAGCTGATCAACACTGGTGTATTTGCCTTGc > 1:2619970/1‑63 (MQ=255) gtcCCGTTCTGAACGCCGACTTTTTTGCCTTTCAGCTGATCAACACTGGTGTATTTGCCTTGCTGACCca > 1:1257488/1‑70 (MQ=255) tcCCGTTCTGTACGCCGACTTTTTTGCCTTTCAGCTGATCAACACTGGTGTATTTGcc < 1:518400/58‑1 (MQ=255) ccGTTCTGTACGCCGACTTTTTTGCCTTTCAGCTGATCAACACTGGTGTATTTGCCTTGCTGACCcaca < 1:2530118/69‑1 (MQ=255) ccGTTCTGTACGCCGACTTTTTTGCCTTTCAGCTGATCAACACTGGTGTATTTGCCTTGCTGACCCACaaa < 1:1981768/71‑1 (MQ=255) ccGTTCTGTACGCCGACTTTTTTGCCTTTCAGCTGATCAACACTGGTGTATTTGCCTTGCTGACCCACaaa < 1:3228455/71‑1 (MQ=255) cGTTCTGAACGCCTACTTTTTTGCCTTTCAGCTGATCAACACTGGTGTATTTGCCTTGCTGACCCACAAAc < 1:3803357/71‑1 (MQ=255) cGTTCTGAACGCCGACTTTTTTGCCTTTCAGCTGATCAACACTGGTGTATTTGCCTTGCTGACCCACAAAc < 1:2854428/71‑1 (MQ=255) gTTCTGTACGCCGACTTTTTTGCCTTTCAGCTGAt > 1:3512131/1‑35 (MQ=255) gTTCTGTACGCCGACTTTTTTGCCTTTCAGCTGATCAACACTGGTGTATTTGCCTTGCTGACCCACaaa > 1:2293537/1‑69 (MQ=255) gTTCTGTACGCCGACTTTTTTGCCTTTCAGCTGATCAACACTGGTGTATTTGCCTTGCTGACCCACAAACa < 1:2657800/71‑1 (MQ=255) ttCTGTACGCCGACTTTTTTGCCTTTCAGCTGATCAACACTGGTGTATTTGCCTTGCTGACCca > 1:2001885/1‑64 (MQ=255) ttCTGTACGCCGACTTTTTTGCCTTTCAGCTGATCAACACTGGTGTATTTGCCTTGCTGACCca > 1:2255618/1‑64 (MQ=255) ttCTGTACGCCGACTTTTTTGCCTTTCAGCTGATCAACACTGGTGTATTTGCCTTGCTGACCca > 1:2317024/1‑64 (MQ=255) ttCTGTACGCCGACTTTTTTGCCTTTCAGCTGATCAACACTGGTGTATTTGCCTTGCTGACCca > 1:718168/1‑64 (MQ=255) cTGTACGCCGACTTTTTTGCCTTTCAGCTGATCAACACTGGTGTATTTGCCTTGCTGa > 1:46546/1‑58 (MQ=255) cTGTACGCCGACTTTTTTGCCTTTCAGCTGATCAACACTGGTGTATTTGCCTTGCTGACCCACAAACAggg > 1:2499909/1‑71 (MQ=255) cTGTACGCCGACTTTTTTGCCTTTCAGCTGATCAACACTGGTGTATTTGCCTTGCTGACCCACAAACAggg > 1:1103883/1‑71 (MQ=255) cTGTACGCCGACTTTTTTGCCTTTCAGCTGATCAACACTGGTGTATTTGCCTTGCTGACCCACAAACAggg > 1:3368935/1‑71 (MQ=255) tGTACGCCGACTTTTTTGCCTTTCAGCTGATCAACACTGGTGTATTTGCCTTGCTGa < 1:1542055/57‑1 (MQ=255) | TCATACGGAACGGTAGTGATTTCCGGGTGCTTATCCATAATGAATTTCTGGTGTGTCGTCCCGTTCTGTACGCCGACTTTTTTGCCTTTCAGCTGATCAACACTGGTGTATTTGCCTTGCTGACCCACAAACAGGG > W3110S.gb/902950‑903085 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |