Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 1,726,822 G→A 15.9% T175T (ACC→ACT ydhF ← predicted oxidoreductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb1,726,8220GA15.9% 100.7 / 10.8 44T175T (ACC→ACTydhFpredicted oxidoreductase
Reads supporting (aligned to +/- strand):  ref base G (20/17);  new base A (3/4);  total (23/21)
Fisher's exact test for biased strand distribution p-value = 6.93e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.66e-01

GTCGAGCGTGCCATCCAGCAGTAACGGCTGATGCACCGGGGATATTTCCACCTGATTAGTGGCAAGGGTAAACGGCAGACGTGATTGCAACAGGGCAAATTGCGCAGGCGTAAAGTTCGATACGCCAAAATGACGCA  >  W3110S.gb/1726756‑1726892
                                                                  |                                                                      
gTCGAGCGTGCCATCCAGCAGTAACGGCTGATGCACCGGGGATATTTCCACCTGATTAGTGGCAAGAGTaa                                                                    <  1:3826225/71‑1 (MQ=255)
       gTGCCATCCAGCAGTAACGGCTGATGCACCGGGGATATTTCCACCTGATTAGTGGCAAGGGTAAACgg                                                                >  1:3480685/1‑68 (MQ=255)
           cATCCAGCAGTAACGGCTGATGCACCGGGGATATTTCCACCTGATTAGTGGCAAGGGTAAACGGCAGACGt                                                         <  1:2516563/71‑1 (MQ=255)
           cATCCAGCAGTAACGGCTGATGCACCGGGGATATTTCCACCTGATTAGTGGCAAGAGTAAATGGCAGGCg                                                          >  1:969683/1‑70 (MQ=255)
           cATCCAGCAGTAACGGCTGATGCACCGGGGATATTTCCACCTGATTAGTGGCAAGAGTAAATGGCAGGCg                                                          >  1:706265/1‑70 (MQ=255)
           cATCCAGCAGTAACGGCTGATGCACCGGGGATATTTCCACCTGATTAGTGGCAAGAGTAAATGGCAGGCGt                                                         >  1:1196775/1‑71 (MQ=255)
           cATCCAGCAGTAACCGCTGATGCACCGGGGATATTTCCACCTGATTAGTGGCAAGGGTAAACGGCAGACGt                                                         <  1:2573090/71‑1 (MQ=255)
            aTCCAGCAGTAACGGCTGATGCACCGGGGATATTTCCACCTGATTAGTGGCAAGGGTAAACGGCAGACGTg                                                        <  1:1751877/71‑1 (MQ=255)
              ccAGCAGTAACGGCTGATGCACCGGGGATATTTCCACCTGATTAGTGGCAAGGGTAAACGGCAGACGTGAt                                                      >  1:3146483/1‑71 (MQ=255)
               cagcagTAACGGCTGATGCACCGGGGATATTTCCACCTGATTAGTGGCAAGGGTAAACGGCAGACGTg                                                        >  1:2823989/1‑68 (MQ=255)
               cagcagTAACGGCTGATGCACCGGGGATATTTCCACCTGATTAGTGGCAAGGGTAAACGGCAGACGTGAtt                                                     >  1:3103761/1‑71 (MQ=255)
               cagcagTAACGGCTGATGCACCGGGGATATTTCCACCTGATTAGTGGCAAGGGTAAACGGCAGACGTGAtt                                                     >  1:3820221/1‑71 (MQ=255)
               cagcagTAACGGCTGATGCACCGGGGATATTTCCACCTGATTAGTGGCAAGGGTAAACGGCAGACGTGAtt                                                     >  1:1581690/1‑71 (MQ=255)
                    gTAACGGCTGATGCACCGGGGATATTTCCACCTGATTAGTGGCAAGGGTAAACGGCAGACGTGATTGCaa                                                 <  1:591315/70‑1 (MQ=255)
                    gTAACGGCTGATGCACCGGGGATATTTCCACCTGATTAGTGGCAAGGGTAAACGGCAGACGTGATTGCaa                                                 <  1:1686312/70‑1 (MQ=255)
                    gTAACGGCTGATGCACCGGGGATATTTCCACCTGATTAGTGGCAAGGGTAAACGGCAGACGTGATTGCAAc                                                <  1:2021153/71‑1 (MQ=255)
                    gTAACGGCTGATGCACCGGGGATATTTCCACCTGATTAGTGGCAAGGGTAAACGGCAGACGTGATTGCAAc                                                <  1:2351380/71‑1 (MQ=255)
                    gTAACGGCTGATGCACCGGGGATATTTCCACCTAATTAGTGGCAAGGGTAAACGGCAGACGTGATTGCAAc                                                <  1:3321284/71‑1 (MQ=255)
                    gTAACGGCTGATGCACCGGGGATATTTCCACCTAATTAGTGGCAAGGGTAAACGGCAGACGTGATTGCAAc                                                <  1:3316817/71‑1 (MQ=255)
                      aaCGGCTGATGCACCGGGGATATTTCCACCTGATTAGTGGCAAGGGTAAACGGCAGACGTGATTGCAACAg                                              >  1:3634535/1‑71 (MQ=255)
                       aCGGCTGATGCACCGGGGATATTTCCACCTGATTAGTGGCAAGGGTAAACGGCa                                                              >  1:932697/1‑54 (MQ=255)
                       aCGGCTGATGCACCGGGGATATTTCCACCTGATTAGTGGCAAGGGTAAACGGCAGACGTGATTGCAACAgg                                             >  1:1356121/1‑71 (MQ=255)
                       aCGGCTGATGCACCGGGGATATTTCCACCTGATTAGTGGCAAGGGTAAACGGCAGACGTGATTGCAACAgg                                             >  1:3768754/1‑71 (MQ=255)
                       aCGGCTGATGCACCGGGGATATTTCCACCTGATTAGTGGCAAGGGTAAACGGCAGACGTGATTGCAACAgg                                             >  1:1225091/1‑71 (MQ=255)
                       aCGGCTGATGCACCGGGGATATTTCCACCTGATTAGTGGCAAGGGTAAACGGCAGACGTGATTGCAACAgg                                             >  1:1583160/1‑71 (MQ=255)
                       aCGGCTGATGCACCGGGGATATTTCCACCTGATTAGTGGCAAGGGTAAACGGCAGACGTGATTGCAACAgg                                             >  1:1612744/1‑71 (MQ=255)
                            tGATGCACCGGGGATATTTCCACCTGATTAGTGGCAAGGGTAAACGGCAGACGTGATTGCAACAGGGCaaa                                        >  1:3058394/1‑71 (MQ=255)
                             gATGCACCGGGGATATTTCCACCTGATTAGTGGCAAGGGTAAACGGCAGACGTGATTGCAAc                                                <  1:3300530/62‑1 (MQ=255)
                               tGCACCGGGGATATTTCCACCTGATTAGTGGCAAGGGTAAACGGCAGACGTGATTGCAACAg                                              >  1:3129755/1‑62 (MQ=255)
                               tGCACCGGGGATATTTCCACCTGATTAGTGGCAAGGGTAAACGGCAGACGTGATTGCAACAg                                              >  1:2059796/1‑62 (MQ=255)
                               tGCACCGGGGATATTTCCACCTGATTAGTGGCAAGGGTAAACGGCAGACGTGATTGCAACAGGGCa                                          <  1:3549903/66‑1 (MQ=255)
                                 cACCGGGGATATTTCCACCTGATTAGTGGCAAGGGTAAAc                                                                  >  1:54744/1‑40 (MQ=255)
                                  aCCGGGGATATTTCCACCTGATTAGTGGCAAGGGTAAACGGCAGACGTGATTGCAACAGGGCAAATTgcg                                   >  1:619683/1‑70 (MQ=255)
                                  aCCGGGGATATTTCCACCTGATTAGTGGCAAGGGTAAACGGCAGACGTGATTGCAACAGGGCAAATTgcg                                   >  1:431074/1‑70 (MQ=255)
                                      tggATATTTCCACCTGATTAGTGGCAAGGGTAAACGGCAGACGTGATTGCAACAGGGCa                                          <  1:188746/58‑1 (MQ=255)
                                            tttCCACCTGATTAGTGGCAAGGGTAAACGGCAGACGTGATTGc                                                   <  1:208464/44‑1 (MQ=255)
                                            tttCCACCTGATTAGTGGCAAGGGTAAACGGCAGACGTGATTGCAACAGGGCAAATTGCGCAGGCGTAAAg                        <  1:2524352/71‑1 (MQ=255)
                                                cACCTGATTAGTGGCAAGGGTAAACGGCAGACGTGATTGCAACAGGGCAAATTGCGCAGGCGTAAAGTTc                     <  1:3101476/70‑1 (MQ=255)
                                                     gATTAGTGGCAAGGGTAAACGGCAGACGTGATTGCAACAGGGCAAATTGCGCAGGCGTAAAGTTCGATACg               >  1:3752014/1‑71 (MQ=255)
                                                           tGGCAAGGGTAAACGGCAGACGTGATTGCAACAGGGCAAATTGCGCAGGCGTa                           <  1:3356140/53‑1 (MQ=255)
                                                           tGGCAAGAGTAAATGGCAGGCGTGATTGCAACAGCGCAAATTGCGGAGGTGTAAAGTTTGATAca               <  1:1629351/65‑2 (MQ=255)
                                                           tGGCAAGAGTAAATGGCAGGCGTGATTGCAACAGCGCAAATTGCGCAGGTGTAAAGTTTGATAca               <  1:1912753/65‑2 (MQ=255)
                                                           tGGCAAGAGTAAATGGCAGGCGTGATTGCAACAGCGCAAATTGCGCAGGTGTAAAGTTTGATAca               <  1:67333/65‑2 (MQ=255)
                                                             gCAAGGGTAAACGGCAGACGTGATTGCAACAGGGCAAATTGCGCAGGCGTAAAGTTCGATACGCCAAAAt        <  1:1036599/70‑1 (MQ=255)
                                                                  ggTAAACGGCAGACGTGATTGCAACAGGGCAAATTGCGCAGGCGTAAAGTTCGATACGCCAAAATGACGc   >  1:3770242/1‑70 (MQ=255)
                                                                  ggTAAACGGCAGACGTGATTGCAACAGGGCAAATTGCGCAGGCGTAAAGTTCGATACGCCAAAATGACGCa  <  1:1099468/71‑1 (MQ=255)
                                                                  |                                                                      
GTCGAGCGTGCCATCCAGCAGTAACGGCTGATGCACCGGGGATATTTCCACCTGATTAGTGGCAAGGGTAAACGGCAGACGTGATTGCAACAGGGCAAATTGCGCAGGCGTAAAGTTCGATACGCCAAAATGACGCA  >  W3110S.gb/1726756‑1726892

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: