New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb = 48853862 (1.670)18 (0.520)
+GTG		 4/94 NT 25.0% coding (2779/3363 nt) kefA fused mechanosensitive channel proteins
?W3110S.gb 3380815 = 53 (1.430)coding (218/1368 nt) degQ serine endoprotease, periplasmic

ATTATCCGTAGGTCTTGGTTTTGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/488513‑488538
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAGTTTTTTGGTGATGAT  >  W3110S.gb/3380815‑3380834
                          |||                    
gaTATCCGTTGGTTTTGGTTTCGGTTGTGAAAAGTTTTTTGG         >  1:1171766/3‑42
gaTATCCGTTGGTTTTGGTTTCGGTTGTGAAAAGTTTTTTGG         >  1:2450555/3‑42
gaTATCCGTTGGTTTTGGTTTCGGTTGTGAAAAGTTTTTTGG         >  1:2988575/3‑42
gaTATCCGTTGGTTTTGGTTTCGGTTGTGAAAAGTTTTTTGG         >  1:897869/3‑42
gaTATCCGTTGGTTTTGGTTTCGGTTGTGAAAAGTTTTTTGG         >  1:3060973/3‑42
gaTATCCGTTGGTTTTGGTTTCGGTTGTGAAAAGTTTTTTGG         <  1:3242849/40‑1
gaTATCCGTTGGTTTTGGTTTCGGTTGTGAAAAGTTTTTTGG         >  1:870414/3‑42
gaTATCCGTTGGTTTTGGTTTCGGTTGTGAAAAGTTTTTTGG         >  1:797325/3‑42
gaTATCCGTTGGTTTTGGTTTCGGTTGTGAAAAGTTTTTTGG         >  1:379962/3‑42
  TATCCGTTGGTTTTGGTTTCGGTTGTGAAAAGTTTTTTGGT        >  1:1678224/1‑41
  TATCCGTTGGTTTTGGTTTCGGTTGTGAAAAGTTTTTTGGT        >  1:927043/1‑41
   ATCCGTTGGTTTTGGTTTCGGTTGTGAAAAGTTTTTTGGT        <  1:3281144/40‑1
    TCCGTTGGTTTTGGTTTCGGTTGTGAAAAGTTTTTTGG         >  1:430822/1‑38
    TCCGTTGGTTTTGGTTTCGGTTGTGAAAAGTTTTTTGG         >  1:443368/1‑38
     CCGTTGGTTTTGGTTTCGGTTGTGAAAAGTTTTTT           <  1:3031426/35‑1
      CGTTGGTTTTGGTTTCGGTTGTGAAAAGTTTTTTGGT        <  1:2979144/37‑1
             tTTGGTTTCGGTTGTGAAAAGTTTTTTGGT‑ATGAT  >  1:642168/2‑35
             tTTGGTTTCGGTTGTGAAAAGTTTTTTGGT‑ATGAT  >  1:367377/2‑35
                          |||                    
ATTATCCGTAGGTCTTGGTTTTGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/488513‑488538
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAGTTTTTTGGTGATGAT  >  W3110S.gb/3380815‑3380834

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.