New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb = 71395455 (1.480)42 (1.130) 18/100 NT 45.2% coding (546/546 nt) seqA regulatory protein for replication initiation
?W3110S.gb 2809398 = 47 (1.270)intergenic (+63/‑28) ygaH/mprA predicted inner membrane protein/DNA‑binding transcriptional regulator

ATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/713886‑713954
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAA  >  W3110S.gb/2809398‑2809462
                                                                                                                                      
ATCGAACACATCATGCAGTCGATGCAATTCCCGGGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAC                                                                  >  1:3292666/1‑69
    AACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGG                                                                >  1:928188/1‑68
            ATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTA                                                       >  1:939167/1‑69
            ATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTA                                                       >  1:1917919/1‑69
            ATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTA                                                       >  1:527773/1‑69
            ATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGA                                                            >  1:709979/1‑64
               CAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATG                                                    <  1:127791/69‑1
                 GTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAG                                                  >  1:1241269/1‑69
                 GTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAG                                                  >  1:433956/1‑69
                 GTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAG                                                  >  1:3247994/1‑69
                 GTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAG                                                  >  1:3633729/1‑69
                 GTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGA                                                   <  1:1918992/68‑1
                   CGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATT                                                        <  1:904287/61‑1
                      TGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCAT                                             >  1:2910176/1‑69
                       GCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATA                                            <  1:663375/69‑1
                        CAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATA                                            >  1:2499420/1‑68
                        CAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATA                                            >  1:3635968/1‑68
                           TTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCA                                        <  1:2319235/69‑1
                            TCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAA                                       >  1:3619865/1‑69
                            TCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAA                                       >  1:1584234/1‑69
                            TCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTA                                                       >  1:3125951/1‑53
                             CCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAA                                      >  1:270629/1‑69
                             CCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAA                                      >  1:428216/1‑69
                             CCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGT                                                >  1:2851007/1‑59
                             CCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAAT                                                     <  1:1807032/54‑1
                             CCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAGGCTGAAATTAATGAGGTCATACCCAAA                                      >  1:450652/1‑69
                                  CGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCA                                        <  1:169214/62‑1
                                   GGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTA                                                       <  1:1057656/46‑1
                                   GGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTA                                                       <  1:2011500/46‑1
                                   GGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTA                                                       <  1:1505102/46‑1
                                    GAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCA                                        <  1:3582983/60‑1
                                         GATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAAT                                                     >  1:1063303/1‑42
                                           TTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT                         <  1:1021347/68‑1
                                           TTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT                         <  1:3584358/68‑1
                                           TTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT                         <  1:3316173/68‑1
                                            TGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATTGTTCGTT                         <  1:1330838/67‑1
                                             GAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT                         <  1:1571947/66‑1
                                             GAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT                         <  1:1327516/66‑1
                                                AAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCC                   <  1:1198474/69‑1
                                                AAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCC                   <  1:745076/69‑1
                                                  GGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGAT                                 <  1:887518/53‑1
                                                       GCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT                         <  1:3485293/56‑1
                                                        CGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT                         <  1:1531749/55‑1
                                                             CTATCTCACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAAT       >  1:348/1‑68
                                                                TCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCT    >  1:144245/1‑68
                                                                  TAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAA  >  1:3142377/1‑68
                                                                  TAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAA  >  1:959450/1‑68
                                                                                                                                      
ATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/713886‑713954
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAA  >  W3110S.gb/2809398‑2809462

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.