| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 4547364 = | 3 (0.080) | 11 (0.360) | 7/82 | NT | 77.3% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | 4547678 = | 4 (0.130) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
TTTTGTCGTTTTTTAATATTTTTATGCTTGAGAAAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/4547439‑4547364‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTA > W3110S.gb/4547678‑4547744 TTTTGTCGTTTTTTAATATTTTTATGCTTGAG‑AAAAATACGTAACTTATTTATGATATGGACAGTTTG < 1:1554443/68‑1 TCGTTTTTTAATATTTTTATGCTTGAG‑AAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCC < 1:3276384/68‑1 TCGTTTTTTAATATTTTTATGCTTGAG‑AAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCC < 1:1928233/68‑1 TTTTTAATATTTTTATGCTTGAG‑AAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCTAAT < 1:260258/68‑1 TTTTAATATTTTTATGCTTGAG‑AAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGT > 1:1517749/1‑69 TTTTAATATTTTTATGCTTGAG‑AAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGT > 1:359835/1‑69 TTTTTATGCTTGAG‑AAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTCATCTT > 1:2046819/1‑69 TTTATGCTTGAGAAAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTT > 1:911516/1‑62 TTGAG‑AAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTG < 1:1953864/63‑1 AAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCA > 1:1561251/1‑41 AAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCA > 1:2474910/1‑41 TTATTTATGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTG < 1:2009784/58‑1 TATGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCA < 1:2098942/68‑1 TATGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCA < 1:3310625/68‑1 TATGATATGGACAGTTTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCA < 1:3099382/68‑1 TGGACAGTTTGGCCCCAAATGTTTCATCTTTTGGGGGAAA > 1:757711/1‑40 TGGACAGTTTGGCCCCAAATGTTTCATCTTTTGGGGGAAA > 1:2659903/1‑40 GACAGTTTGGCCCCAAATGTTTCATCTTTTGGGGGAAGACTGTGCAGTGTTGGAAGTCAAACTCGTTT > 1:1513411/1‑68 GACAGTTTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTT > 1:1691343/1‑68 CCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTG < 1:521150/69‑1 AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTA < 1:3297734/69‑1 AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTA < 1:132233/69‑1 AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAA > 1:2602306/1‑58 AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAA > 1:2468287/1‑58 AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAA > 1:2182040/1‑58 AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAA > 1:2082434/1‑58 AAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACA > 1:2623429/1‑57 TTTTGTCGTTTTTTAATATTTTTATGCTTGAGAAAAAATACGTAACTTATTTATGATATGGACAGTTTGGCCCCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/4547439‑4547364‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTA > W3110S.gb/4547678‑4547744 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |