| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2172309 = | NA (NA) | 32 (0.900) | 16/96 | NT | 100% | pseudogene (1562/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | W3110S.gb | 3932930 = | 0 (0.000) | coding (219/1608 nt) | dppA | dipeptide transporter | |||||
ATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACT > W3110S.gb/2172241‑2172369 | atTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTg < 1:3373075/69‑1 (MQ=255)atTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTg < 1:2653174/69‑1 (MQ=255)atTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGGCGAGAATAACGGTCTg < 1:1132706/69‑1 (MQ=255) tttttGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGa > 1:3169400/1‑69 (MQ=255) tttttGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGa > 1:3687116/1‑69 (MQ=255) cGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTAc < 1:126476/68‑1 (MQ=255) cGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGGCGAGAATAACGGTCTGATCTTAc < 1:728873/68‑1 (MQ=255) gTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCa < 1:3437156/69‑1 (MQ=255) gTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCa < 1:1487278/69‑1 (MQ=255) cATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGc < 1:28720/69‑1 (MQ=255) tAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCaa < 1:2387363/68‑1 (MQ=255) tAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCaa < 1:2721592/68‑1 (MQ=255) tAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCaa < 1:389284/68‑1 (MQ=255) tAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCaa < 1:1938147/68‑1 (MQ=255) tAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCaa < 1:1779406/68‑1 (MQ=255) tAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCaa < 1:905979/68‑1 (MQ=255) tAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAAt < 1:2811080/69‑1 (MQ=255) tAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAAt < 1:1547664/69‑1 (MQ=255) tAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAAt < 1:3509327/69‑1 (MQ=255) aaTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATa > 1:582792/1‑69 (MQ=255) aaTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATa > 1:2385691/1‑69 (MQ=255) ccTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGtt > 1:1966446/1‑68 (MQ=255) ccTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTg > 1:2803801/1‑69 (MQ=255) ccTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTg > 1:1721073/1‑69 (MQ=255) cTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTAc < 1:3325825/56‑1 (MQ=255) cTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTAc < 1:2204695/56‑1 (MQ=255) cTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTAc < 1:3463917/56‑1 (MQ=255) cTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTAc < 1:1558494/56‑1 (MQ=255) cTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTAc < 1:3648896/56‑1 (MQ=255) tCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGa < 1:341533/48‑1 (MQ=255) tCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGa > 1:1005529/1‑48 (MQ=255) tCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGa < 1:3002842/48‑1 (MQ=255) tCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGa > 1:587834/1‑48 (MQ=255) tCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGa > 1:3294238/1‑48 (MQ=255) tCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGa < 1:2025108/48‑1 (MQ=255) tCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGa < 1:790294/68‑1 (MQ=255) tCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGa < 1:1402093/68‑1 (MQ=255) tCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGa < 1:1546814/68‑1 (MQ=255) tCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTATGa > 1:3340003/1‑48 (MQ=255) tCGGCGATAAGCATTGTCGTACTTCCGCCGTCGAGAATAACGGTCTGa < 1:3347756/48‑1 (MQ=255) gATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAAt < 1:2529064/57‑1 (MQ=255) gATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAAt < 1:2483306/57‑1 (MQ=255) gATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAAt < 1:958564/57‑1 (MQ=255) gATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAAt < 1:621994/57‑1 (MQ=255) gATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAAt < 1:1837689/57‑1 (MQ=255) aGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTg < 1:2514428/38‑1 (MQ=255) gTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGa > 1:3618200/1‑68 (MQ=255) gTACTTCCGCTGTGGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaa > 1:2380789/1‑69 (MQ=255) gTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaa > 1:488597/1‑69 (MQ=255) gTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa < 1:2962091/68‑1 (MQ=255) gTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa < 1:3189148/68‑1 (MQ=255) gTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa < 1:533723/68‑1 (MQ=255) cTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa < 1:1013978/65‑1 (MQ=255) cTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa < 1:3093828/65‑1 (MQ=255) cTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAct < 1:1953956/69‑1 (MQ=255) tCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGc > 1:2597852/1‑36 (MQ=255) ccGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACtctc > 1:890015/1‑69 (MQ=255) ccGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACtctc > 1:702488/1‑69 (MQ=255) cGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAAt > 1:3162226/1‑37 (MQ=255) cGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAAt > 1:775644/1‑37 (MQ=255) gCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACtctc < 1:298157/67‑1 (MQ=255) gagaATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGTCTaa > 1:3222383/1‑47 (MQ=255) gagaATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTaa > 1:2119141/1‑47 (MQ=255) gagaATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTaa > 1:3361912/1‑47 (MQ=255) gagaATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTaa > 1:2702065/1‑47 (MQ=255) gagaATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTaa > 1:1644502/1‑47 (MQ=255) gagaATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTa < 1:1200752/54‑1 (MQ=255) gagaATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag > 1:297680/1‑69 (MQ=255) gagaATAACGGTCTGATCTTACCAAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag > 1:1666256/1‑69 (MQ=255) gagaATAACGGTCTGATCATACCCAGCAATAGTGGACAAGCGGCTaa > 1:2749588/1‑47 (MQ=18) aaCGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACt < 1:959626/69‑1 (MQ=39) aCGTTCTGATCTTACCCAGCAATAGTGGACACGCGGCt > 1:1050807/1‑38 (MQ=255) aCGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCt > 1:1380001/1‑38 (MQ=255) aCGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCt > 1:19833/1‑38 (MQ=255) | ATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACT > W3110S.gb/2172241‑2172369 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |