New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 71265	32 (0.860)	16 (0.600) +AGGGTCCCTAAGTC	12/72	NT	56.9%	coding (879/879 nt)	araC	DNA‑binding transcriptional dual regulator
	?	W3110S.gb	3464879 =	2 (0.050)					intergenic (‑255/+46)	murB/rrfB	UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA

TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGC  >  W3110S.gb/3464818‑3464933                                                              |                                                       ccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAAc                                                   >  1:819810‑M2/62‑67 (MQ=255) ccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa                                                 <  1:621464‑M2/8‑1 (MQ=255)   ggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGaa                                                <  1:1832753‑M2/9‑1 (MQ=255)     ttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAgg                                             >  1:1668443‑M2/58‑69 (MQ=255)       gtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGcc                                           <  1:3661064‑M2/14‑1 (MQ=255)       gtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGcc                                           <  1:2388612‑M2/14‑1 (MQ=255)       gtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGcc                                           <  1:3111071‑M2/14‑1 (MQ=255)            gaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTc                                      >  1:3311496‑M2/51‑69 (MQ=255)               aaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCtt                                    >  1:3208720‑M2/48‑68 (MQ=255)                 agtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAgg                                             >  1:897176‑M2/46‑57 (MQ=255)                            tagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCttt                      >  1:3272500‑M2/35‑69 (MQ=255)                                    aagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCttt                      >  1:3557426‑M2/27‑61 (MQ=255)                                    aagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCttt                      >  1:3027670‑M2/27‑61 (MQ=255)                                      gttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAttt            <  1:2476669‑M2/45‑1 (MQ=255)                                        gCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAttt            >  1:1439526/1‑67 (MQ=35)                                         gtcataaagggtccctaagtcTAAAACGAAAGGccc                                          >  1:98218‑M2/22‑36 (MQ=255)                                         gtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTgac         >  1:2027634‑M2/22‑68 (MQ=255)                                              aaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATttgaccg       <  1:1212705‑M2/50‑4 (MQ=255)                                                cGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGc  <  1:206146/69‑1 (MQ=35)                                                      cctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTg                             >  1:2391757‑M2/9‑36 (MQ=255)                                                      cctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAttt            <  1:25057‑M2/45‑1 (MQ=255)                                                           aGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTgg   <  1:232480/57‑1 (MQ=35)                                                              |                                                       TTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGC  >  W3110S.gb/3464818‑3464933

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.