| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2018571 = | 0 (0.000) | 33 (0.950) | 17/94 | NT | 100% | coding (567/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | 2519723 = | NA (NA) | intergenic (+33/‑54) | nupC/insL | nucleoside (except guanosine) transporter/predicted transposase | |||||
TGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGA > W3110S.gb/2519656‑2519780 | tgCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCAt < 1:3190190/69‑1 (MQ=255) cTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAgc > 1:3632802/1‑67 (MQ=255) gcagcaCTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAggg > 1:2127629/1‑69 (MQ=255) aCTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTtgt > 1:190651/1‑68 (MQ=255) gCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTAt < 1:3317531/67‑1 (MQ=255) gCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTAt < 1:2932302/67‑1 (MQ=255) gCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTAt < 1:2530814/67‑1 (MQ=255) tAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTtgt < 1:418462/58‑1 (MQ=255) aGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCt > 1:1463584/1‑68 (MQ=255) aCCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGat > 1:691384/1‑69 (MQ=255) ccATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTAt > 1:1000730/1‑58 (MQ=255) ccATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTAt < 1:1064433/58‑1 (MQ=255) tacataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACtt < 1:2418350/41‑1 (MQ=255) tacataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACtt < 1:3542210/41‑1 (MQ=255) tacataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATg > 1:2054091/1‑68 (MQ=255) acataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGa > 1:2693452/1‑68 (MQ=255) cataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTAt < 1:334796/53‑1 (MQ=255) cataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCt < 1:3593513/60‑1 (MQ=255) taAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAttt < 1:1030626/68‑1 (MQ=255) aaaaaaGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTaa > 1:3670461/1‑69 (MQ=255) aaaaaaGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTaa > 1:1868749/1‑69 (MQ=255) aaaaaGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTgg < 1:3518705/46‑1 (MQ=255) aaaaaGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTgg < 1:810954/46‑1 (MQ=255) gATAATTCCCATAAGCGCTAAGTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa > 1:219783/1‑68 (MQ=255) gATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa > 1:449400/1‑68 (MQ=40) gATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa > 1:1825937/1‑68 (MQ=40) | TGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGA > W3110S.gb/2519656‑2519780 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |