| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173565 | NA (NA) | 33 (0.890) | 18/100 | NT | 100% | pseudogene (306/2041 nt) pseudogene (306/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | = 3932933 | 0 (0.000) | coding (222/1608 nt) | dppA | dipeptide transporter | |||||
CCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTA > W3110S.gb/3932866‑3933000 | ccTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGt > 1:139943‑M2/1‑68 (MQ=255) tATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtga > 1:3211221‑M2/1‑66 (MQ=255) aTGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgat < 1:1105229‑M2/69‑5 (MQ=255) aTGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtga > 1:1246123‑M2/1‑65 (MQ=255) aTGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGt > 1:319756‑M2/1‑65 (MQ=255) aTGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGt > 1:3621611‑M2/1‑65 (MQ=255) gCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatccta > 1:2078439‑M2/1‑60 (MQ=255) ttCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccac < 1:2692066‑M2/68‑14 (MQ=255) ttCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacc > 1:754921‑M2/1‑55 (MQ=255) actgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGc > 1:2086156‑M2/51‑68 (MQ=255) actgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGc > 1:3554307‑M2/51‑68 (MQ=255) ccGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgt < 1:1555524‑M2/68‑16 (MQ=255) ccGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgt < 1:1249696‑M2/68‑16 (MQ=255) ccGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccac < 1:2181584‑M2/66‑14 (MQ=255) gTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa > 1:1010001‑M2/1‑51 (MQ=255) gTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgta > 1:2576257‑M2/1‑51 (MQ=255) gTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgt > 1:1897671‑M2/1‑51 (MQ=255) tCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaat > 1:3300081‑M2/1‑50 (MQ=255) ccGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaat < 1:1341469‑M2/66‑19 (MQ=255) ccGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaat < 1:3387625‑M2/66‑19 (MQ=255) ccGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaat < 1:3258828‑M2/66‑19 (MQ=255) ccGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaat < 1:91580‑M2/66‑19 (MQ=255) ccGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaat < 1:2896143‑M2/66‑19 (MQ=255) ccGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa > 1:3173468‑M2/1‑48 (MQ=255) ccGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacacacgtaat < 1:3701935‑M2/66‑19 (MQ=255) tactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaa < 1:2030823‑M2/22‑1 (MQ=255) tactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaa < 1:3641251‑M2/22‑1 (MQ=255) ttATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa < 1:2799565‑M2/60‑18 (MQ=255) aCCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggc < 1:1895911‑M2/68‑31 (MQ=255) ttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTc < 1:1244375‑M2/34‑1 (MQ=255) ttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTc < 1:794777‑M2/34‑1 (MQ=255) gTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaa < 1:2691085‑M2/69‑35 (MQ=255) ccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg < 1:2223753‑M2/38‑1 (MQ=255) ccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg < 1:2944128‑M2/38‑1 (MQ=255) ccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg < 1:2827972‑M2/38‑1 (MQ=255) cTGGTTGAATTTAAAATCGGCACCACCGAAGTGtg < 1:2390974‑M2/35‑3 (MQ=255) tGGTTGAATTTAAAATCGGCACCACCGAAGTGtgctcctacccacgtaatatgga < 1:3384345‑M2/55‑24 (MQ=255) tGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcg > 1:1604281‑M2/1‑32 (MQ=255) ggTTGAATTTAAAATCGGCACCTCCGAAGTGtgatcctacccacgtaa > 1:1297141‑M2/1‑31 (MQ=255) gtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGAc > 1:1405311‑M2/26‑68 (MQ=255) tGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa < 1:2816485‑M2/45‑18 (MQ=255) gAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgt > 1:1637769‑M2/1‑27 (MQ=255) gAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgt > 1:2331790‑M2/1‑27 (MQ=255) gAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgt > 1:744831‑M2/1‑27 (MQ=255) gAATTTAAAATCGGCACCACCGAAGTGtaatcctacccacgt > 1:2738883‑M2/1‑27 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGaa > 1:984046‑M2/23‑53 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACgg > 1:1621738‑M2/23‑67 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGt > 1:1546772‑M2/23‑68 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGt > 1:1557317‑M2/23‑68 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGt > 1:1511102‑M2/23‑68 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGt > 1:2890911‑M2/23‑68 (MQ=255) aTTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttc > 1:2798347‑M2/1‑25 (MQ=255) aTTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa > 1:3598663‑M2/1‑25 (MQ=255) aTTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa > 1:3255829‑M2/1‑25 (MQ=255) cactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaaa > 1:1288263‑M2/21‑69 (MQ=255) cactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaaa < 1:972389‑M2/49‑1 (MQ=255) cactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaa < 1:1915628‑M2/48‑1 (MQ=255) tAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgt > 1:992068‑M2/1‑22 (MQ=255) tattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAcc < 1:2084940‑M2/52‑1 (MQ=255) tattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAcc < 1:242231‑M2/52‑1 (MQ=255) tattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAcc > 1:906972‑M2/18‑69 (MQ=255) tattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAcc < 1:2830410‑M2/52‑1 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta > 1:2099203‑M2/16‑69 (MQ=255) gctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta < 1:971486‑M2/54‑1 (MQ=255) ggCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaa > 1:807416‑M2/1‑15 (MQ=255) ggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCt > 1:1495312‑M2/10‑68 (MQ=255) taagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAg > 1:2818890‑M2/8‑39 (MQ=255) taagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAg > 1:1866585‑M2/8‑39 (MQ=255) taagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAg > 1:3278495‑M2/8‑39 (MQ=255) taagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAg > 1:892505‑M2/8‑39 (MQ=255) taagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAg > 1:1514902‑M2/8‑39 (MQ=255) taagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTc < 1:1939778‑M2/61‑1 (MQ=255) agatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCAt > 1:1711687‑M2/6‑69 (MQ=255) agatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCAt > 1:2081036‑M2/6‑69 (MQ=255) tcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTg > 1:2512688‑M2/3‑69 (MQ=255) tcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTg > 1:2866229‑M2/3‑69 (MQ=255) tcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTg > 1:1610573‑M2/3‑69 (MQ=255) cAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaa > 1:746124‑M2/2‑49 (MQ=255) cAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaa > 1:1919137‑M2/2‑49 (MQ=255) cAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaa > 1:2265366‑M2/2‑49 (MQ=255) cAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCt > 1:3499257‑M2/2‑67 (MQ=255) cAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTg > 1:886419‑M2/2‑68 (MQ=255) tGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTa < 1:3432926/69‑1 (MQ=255) gATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTcc > 1:2526722/1‑59 (MQ=255) gATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTcc > 1:2842326/1‑59 (MQ=255) | CCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTA > W3110S.gb/3932866‑3933000 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |