| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | W3110S.gb | 2,702,790 | C→T | 69.4% | intergenic (‑71/+201) | rnc ← / ← lepB | RNase III/leader peptidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 2,702,790 | 0 | C | T | 69.4% | 62.2 / 40.8 | 49 | intergenic (‑71/+201) | rnc/lepB | RNase III/leader peptidase |
| Reads supporting (aligned to +/- strand): ref base C (11/4); new base T (18/16); total (29/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.21e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.50e-01 | |||||||||||
AATAAATGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCG > W3110S.gb/2702732‑2702848 | aataaatGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAATTGCTTCGc > 1:1585635/1‑67 (MQ=255)aataaatGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGc > 1:1201839/1‑67 (MQ=255) taaatGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAATTGCTTCGCTGca < 1:3468625/69‑1 (MQ=255) taaatGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAATTGCTTCGCTGca < 1:2486544/69‑1 (MQ=255) taaatGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAATTGCTTCGCTGca < 1:1629711/69‑1 (MQ=255) taaatGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAATTGCTTCGCTGc < 1:2608985/68‑1 (MQ=255) tCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGcagtttcag > 1:780446/1‑68 (MQ=255) tCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGcagtttcag > 1:1352516/1‑68 (MQ=255) caacaaTTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGc < 1:1897398/56‑1 (MQ=255) caaTTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAAc > 1:3546874/1‑45 (MQ=255) caaTTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAATTGCTTCGCTGcagtttcagtt > 1:433356/1‑66 (MQ=255) tCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAATTGCTTCGCTGc > 1:930674/1‑52 (MQ=255) tCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAATTGCTTCGCTGCAGTTTCAGTTTACCgt > 1:139341/1‑67 (MQ=255) tCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAATTGCTTCGCTGCAGTTTCAGTTTACCgg > 1:1488123/1‑68 (MQ=255) tCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAATTGCTTCGCTGCAGTTTCAGTTTACCgg > 1:652898/1‑68 (MQ=255) tCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAATTGCTTCGCTGCAGTTTCAGTTTACCgg > 1:1786766/1‑68 (MQ=255) cAGCACACGAAACAGACCTGATATACATGGTTCTGCTAATTGCTTCGCTGCAGTTTCAGTTTACCGGta < 1:2660670/69‑1 (MQ=255) cAGCACACGAAACAGACCTGATATACATGGTTCTGCTAATTGCTTCGCTGCAGTTTCAGTTTACCGGta < 1:242368/69‑1 (MQ=255) cAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGta < 1:2469854/69‑1 (MQ=255) cacaCGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTatat < 1:2982984/69‑1 (MQ=255) cacaCGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTatat < 1:826168/69‑1 (MQ=255) acacGAAACAGACCTGATATACATGGTTCTGCTAATTGCTTCGCTGca < 1:1358125/48‑1 (MQ=255) acacGAAACAGACCTGATATACATGGTTCTGCTAATTGCTTCGCTGCAGTTTCAGTTTACCGGTATATg < 1:3618897/69‑1 (MQ=255) cGAAACAGACCTGATATACATGGTTCTGCTAATTGCTTCGCTGCAGTTTCAGTTTACCGGtata < 1:3661046/64‑1 (MQ=255) cGAAACAGACCTGATATACATGGTTCTGCTAATTGCTTCGCTGCAGTTTCAGTTTACCGGtata > 1:510939/1‑64 (MQ=255) cGAAACAGACCTGATATACATGGTTCTGCTAATTGCTTCGCTGCAGTTTCAGTTTACCGGTATATgggg > 1:417149/1‑69 (MQ=255) cGAAACAGACCTGATATACATGGTTCTGCTAATTGCTTCGCTGCAGTTTCAGTTTACCGGTATATgggg > 1:536074/1‑69 (MQ=255) cGAAACAGACCTGATATACATGGTTCTGCTAATTGCTTCGCTGCAGTTTCAGTTTACCGGTATATgggg > 1:870830/1‑69 (MQ=255) aaaCAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGtat > 1:2272218/1‑61 (MQ=255) aaaCAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGtat > 1:1268253/1‑61 (MQ=255) aaaCAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGtat > 1:754321/1‑61 (MQ=255) aaaCAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGtat > 1:2118265/1‑61 (MQ=255) aaaCAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGtat > 1:265899/1‑61 (MQ=255) aaaCAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGtat > 1:2648249/1‑61 (MQ=255) aaCAGACCTGATATACATGGTTCTGCTAATTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGAcc < 1:3522772/69‑1 (MQ=255) tGATATACATGTTTCTGCTAATTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGt < 1:1971497/69‑1 (MQ=255) tGATATACATGGTTCTGCTAATTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGt < 1:2849099/69‑1 (MQ=255) tGATATACATGGTTCTGCTAATTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGt < 1:1628565/69‑1 (MQ=255) tGATATACATGGTTCTGCTAATTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGt < 1:2172924/69‑1 (MQ=255) tGATATACATGGTTCTGCTAATTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGt < 1:2376004/69‑1 (MQ=255) gATATACATGGTTCTGCTAATTGCTTCGCTGCAGTTTCAGTTTACCGGta > 1:2950467/1‑50 (MQ=255) gATATACATGGTTCTGCTAATTGCTTCGCTGCAGTTTCAGTTTACCGGta > 1:2702071/1‑50 (MQ=255) gATATACATGGTTCTGCTAATTGCTTCGCTGCAGTTTCAGTTTACCGGta > 1:2544267/1‑50 (MQ=255) ataCATGGTTCTGCTAATTGCTTCGCTGcagtttcagttt > 1:556739/1‑40 (MQ=255) ataCATGGTTCTGCTAATTGCTTCGCTGcagtttcagttt > 1:1843150/1‑40 (MQ=255) ataCATGGTTCTGCTAATTGCTTCGCTGcagtttcagttt > 1:1942816/1‑40 (MQ=255) cATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCgtgt > 1:1057757/1‑69 (MQ=255) gTTCTGCTAATTGCTTCGCTGCAGTTTCAGTTTACCGGta > 1:3209444/1‑40 (MQ=255) gTTCTGCTAATTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCg < 1:2046332/69‑1 (MQ=255) tCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGta > 1:1655876/1‑38 (MQ=255) | AATAAATGCGTCAACAATTCAGCACACGAAACAGACCTGATATACATGGTTCTGCTAACTGCTTCGCTGCAGTTTCAGTTTACCGGTATATGGGGACCAACGCTGTTTCGTGTGCCG > W3110S.gb/2702732‑2702848 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |