| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | W3110S.gb | 3,404,820 | G→A | 52.1% | intergenic (+507/‑471) | yhdH → / → accB | predicted oxidoreductase, Zn‑dependent and NAD(P)‑binding/acetyl CoA carboxylase, BCCP subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 3,404,820 | 0 | G | A | 52.1% | ‑2.6 / 69.8 | 48 | intergenic (+507/‑471) | yhdH/accB | predicted oxidoreductase, Zn‑dependent and NAD(P)‑binding/acetyl CoA carboxylase, BCCP subunit |
| Reads supporting (aligned to +/- strand): ref base G (10/13); new base A (16/9); total (26/22) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.46e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.69e-01 | |||||||||||
TCGTCTATCTTGTCGCGATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTCATCTTCGCAGGGCTGGCTTTTCAGCTTTTCACCTTACGTTATAAGAAGTTCCGTCGAT > W3110S.gb/3404753‑3404884 | tcgtcTATCTTGTCGCGATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGATTATCTCATTGCAGc > 1:3310065/1‑69 (MQ=255) gtcTATCTTGTCGCGATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGATTATCTCATTGCAGcc < 1:1867950/68‑1 (MQ=255) cTATCTTGTCGCGATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGATTATCTCATTGCAAcccc < 1:1468062/68‑1 (MQ=255) cTATCTTGTCGCGATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGATTATCTCATTGCAAcccc < 1:430083/68‑1 (MQ=255) cTATCTTGTCGCGATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGATTATCTCATT‑CAGCCCCTc < 1:1895160/69‑1 (MQ=255) tATCTTGTCGCGATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTc > 1:390320/1‑69 (MQ=255) tATCTTGTCGCGATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGATTATCTCATTGCAACCCCTc > 1:999002/1‑69 (MQ=255) tATCTTGTCGCGATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGATTATCTCATTGCAACCCCTc > 1:62284/1‑69 (MQ=255) ttGTCGCGATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTCAt < 1:3623465/67‑1 (MQ=255) ttGTCGCGATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTCATc < 1:1682636/68‑1 (MQ=255) ttGTCGCGATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTCATc < 1:1409821/68‑1 (MQ=255) cgcgATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTCAt < 1:784706/63‑1 (MQ=255) cgATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGATTATCTCATTGCAACCCCTCATCTTCGCAg > 1:1932209/1‑69 (MQ=255) ccTACATTATTTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTCATCTTCGCAGGGCTGgcttttca > 1:1943147/1‑69 (MQ=255) ccTACATTATTTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTCATCTTCGCAGGGCTGgcttttca > 1:945221/1‑69 (MQ=255) ccTACATTATTTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTCATCTTCGCAGGGCTGgcttttca > 1:1226851/1‑69 (MQ=255) ccTACATTATTTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTCATCTTCGCAGGGCTGgcttttca > 1:3237031/1‑69 (MQ=255) tACATTATTTGTGGTCTGTGAAGATTATCTCATTGCAACCCCTCATCTTCGCAGGGCTGgcttttcag < 1:1448215/68‑1 (MQ=255) tACATTATTTGTGCTCTGTGAAGATTATCTCATTGCAACCCCTCATCTTCGCAGGGCTGgcttttcag < 1:2850484/68‑1 (MQ=255) cATTATTTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCt > 1:1199924/1‑41 (MQ=255) cATTATTTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTCATCTTCg > 1:1994684/1‑49 (MQ=255) cATTATTTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTCATCTTCGCAGGGCTGgcttttcagc > 1:3006575/1‑67 (MQ=255) cATTATTTGTGGTCTGTGAAGATTATCTCATTGCAACCCCt > 1:673702/1‑41 (MQ=255) ttattTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTc < 1:2715337/40‑1 (MQ=255) ttattTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTc < 1:3019476/40‑1 (MQ=255) ttattTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTc < 1:2676569/40‑1 (MQ=255) ttattTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTCATCTTCGCAGGGCTGgcttttcagctttt < 1:1260903/69‑1 (MQ=255) ttattTGTGGTCTGTGAAGATTATCTCATTGCAACCCCTCATCTTCGCAGGGCTGgcttttcagctttt < 1:3662964/69‑1 (MQ=255) attTGTGGTCTGTGAAGATTATCTCATTGCAGccc > 1:3647733/1‑35 (MQ=255) attTGTGGTCTGTGAAGATTATCTCATTGCAACCCCTCATCTTCg > 1:1590977/1‑45 (MQ=255) attTGTGGTCTGTGAAGATTATCTCATTGCAACCCCTCATCTTCGCAGGGCTGgcttttcagcttttcc > 1:3338292/1‑68 (MQ=255) attTGTGGTCTGTGAAGATTATCTCATTGCAACCCCTCATCTTCGCAGGGCTGgcttttcagcttttca > 1:2718937/1‑69 (MQ=255) attTGTGGTCTGTGAAGATTATCTCATTGCAACCCCTCATCTTCGCAGGGCTGgcttttcagcttttca > 1:604638/1‑69 (MQ=255) attTGTGGTCTGTGAAGATTATCTCATTGCAACCCCTCATCTTCGCAGGGCTGgcttttcag > 1:3470083/1‑62 (MQ=255) attTGTGGTCTGTGAAGATTATCTCATTGCAACCCCTCATCTTCGCAGGGCTGgcatttcag > 1:1074554/1‑62 (MQ=255) gtgGTCTGTGAAGATTATCTCATTGCAACCCCTCATCTTCGCAGGGCTGGCTTTTCAGCTTTTCACCtt > 1:3150165/1‑69 (MQ=255) gtgGTCTGTGAAGATTATCTCATTGCAACCCCTCATCTTCGCAGGGCTGGCTTTTCAGCTTTTCACCt > 1:2830312/1‑68 (MQ=255) ggTCTGTGAAGATTATCTCATTGCAACCCCTCATCTTCGCAGGGCTGGCTTTTCAGCTTTTCACCTTa < 1:3107741/68‑1 (MQ=255) ggTCTGTGAAGATTATCTCATTGCAACCCCTCATCTTCGCAGGGCTGGCTTTTCAGCTTTTCACCTTa < 1:1326863/68‑1 (MQ=255) gAAGATTATCTCATTGCAGCCCCTCATCTTCGCAGGGCTGGCTTTTCAGCTTTTCACCtt < 1:3185848/60‑1 (MQ=255) gAAGATTATCTCATTGCAGCCCCTCATCTTCGCAGGGCTGGCTTTTCAGCTTTTCACCtt < 1:2501587/60‑1 (MQ=255) gATTATCTCATTGCAACCCCTCATCTTCGCAGGGCTGgcttttcagcttt > 1:476510/1‑50 (MQ=255) gATTATCTCATTGCAACCCCTCATCTTCGCAGGGCTGGCTTTTCAGCTTTTCACCTTACGTTATaag > 1:1740903/1‑67 (MQ=255) tATCTCATTGCAACCCCTCATCTTCGCAGGGCTGGCTTTTCAGCTTTTCACCTTACGTTATAAGAAGtt > 1:3108095/1‑69 (MQ=255) ctcATTGCAACCCCTCATCTTCGCAGGGCTGGCTTTTCAGCTTTTCACCTTACGTTATAAGAAGTTCCg > 1:2733419/1‑69 (MQ=255) cATTGCAACCCCTCATCTTCGCAGGGCTGgcttttca < 1:2334596/37‑1 (MQ=255) tGCAGCCCCTCATCTTCGCAGGGCTGGCTTTTCAGCTTTTCACCTTACGTTATAAGAAGTTCCGTCgat < 1:2268812/69‑1 (MQ=255) tGCAACCCCTCATCTTCGCAGGGCTGGCTTTTCAGCTTTTCACCTTACGTTATAAGAAGTTCCGTCgat < 1:389784/69‑1 (MQ=255) | TCGTCTATCTTGTCGCGATCCTGGCATCCCTACATTATTTGTGGTCTGTGAAGATTATCTCATTGCAGCCCCTCATCTTCGCAGGGCTGGCTTTTCAGCTTTTCACCTTACGTTATAAGAAGTTCCGTCGAT > W3110S.gb/3404753‑3404884 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |