| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | W3110S.gb | 3,803,370 | A→C | 39.4% | L32R (CTT→CGT) | setC ← | predicted sugar efflux system |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 3,803,370 | 0 | A | C | 39.4% | ‑5.8 / 36.2 | 28 | L32R (CTT→CGT) | setC | predicted sugar efflux system |
| Reads supporting (aligned to +/- strand): ref base A (14/3); new base C (9/2); total (23/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.55e-01 | |||||||||||
TAGGACGGGCTTTCAGTTCATCTGCGAGGAATATACTTAGGGTAGGAGTCTGAAGAGCGCCCGCAATACCCGTCAGAAAGGCGACAAGTAAAAATGCCGCGGCAGTGAGATCAAGTATTT > W3110S.gb/3803317‑3803436 | taGGACGGGCTTTCAGTTCATCTGCGAGGAATATACTTAGGGTAGGAGTCTGAAGAGCGCCCGCAATAc > 1:1053660/1‑69 (MQ=255)taGGACGGGCTTTCAGTTCATCTGCGAGGAATATACTTAGGGTAGGAGTCTGAAGAGCGCCCGCAATAc > 1:1132568/1‑69 (MQ=255)taGGACGGGCTTTCAGTTCATCTGCGAGGAATATACTTAGGGTAGGAGTCTGAAGAGCGCCCGCAATAc > 1:233925/1‑69 (MQ=255) cGGGCTTTCAGTTCATCTGCGAGGAATATACTTAGGGTAGGAGTCTGACGAGCGCCCGc < 1:2591315/59‑1 (MQ=255) tCAGTTCATCTGCGAGGAATATACTTAGGGTAGGAGTCTGACGAGCGCCCGc < 1:3437196/52‑1 (MQ=255) aGTTCATCTGCGAGGAATATACTTAGGGTAGGAGTCTGAAGAGCGCCCGCAATACCCGTCAGAAAGGc < 1:2530579/68‑1 (MQ=255) tCATCTGCGAGGAATATACTTAGGGTAGGAGTCTGACGAGCGCCCGCAATACCCGTCAGaaa > 1:1342405/1‑62 (MQ=255) tCATCTGCGAGGAATATACTTAGGGTAGGAGTCTGACGAGCGCCCGCAATACCCGTCAGaaa > 1:1346640/1‑62 (MQ=255) tCATCTGCGAGGAATATACTTAGGGTAGGAGTCTGAAGAGCGCCCGCAATACCCGTCAGAAAGGCGACa > 1:826824/1‑69 (MQ=255) cATCTGCGAGGAATATACTTAGGGTAGGAGTCTGAAGAGCGCCCGCAATACCCGTCAGAAAGGCGACa > 1:848617/1‑68 (MQ=255) aGGAATATACTTAGGGTAGGAGTCTGAAGAGCGCCCGCAATACCCGTCAGAAAGGCGACAAGTaaa < 1:1843683/66‑1 (MQ=255) taCTTAGGGTAGGAGTCTGACGAGCGCCCGCAATACCCGTCAGAAAGGCGACAAGTAAAAATGCcgc > 1:1797073/1‑67 (MQ=255) taCTTAGGGTAGGAGTCTGACGAGCGCCCGCAATACCCGTCAGAAAGGCGACAAGTAAAAATGCcgc > 1:753277/1‑67 (MQ=255) taCTTAGGGTAGGAGTCTGACGAGCGCCCGCAATACCCGTCAGAAAGGCGACAAGTAAAAATGCcgc > 1:3320137/1‑67 (MQ=255) taCTTAGGGTAGGAGTCTGACGAGCGCCCGCAATACCCGTCAGAAAGGCGACAAGTAAAAATGCcgc > 1:3139264/1‑67 (MQ=255) taCTTAGGGTAGGAGTCTGACGAGCGCCCGCAATACCCGTCAGAAAGGCGACAAGTAAAAATGCcgc > 1:2968953/1‑67 (MQ=255) taCTTAGGGTAGGAGTCTGACGAGCGCCCGCAATACCCGTCAGAAAGGCGACAAGTAAAAATGCcgc > 1:1938730/1‑67 (MQ=255) taCTTAGGGTAGGAGTCTGAAGAGCGCCCGCAATACCCGTCAGAAAGGCGACAAGTAAAAATGCcgc > 1:2807172/1‑67 (MQ=255) taCTTAGGGTAGGAGTCTGAAGAGCGCCCGCAATACCCGTCAGAAAGGCGACAAGTAAAAATGCcgc > 1:3252934/1‑67 (MQ=255) aCTTAGGGTAGGAGTCTGAAGAGCGCCCGCAATACCCGTCAGAAAGGCGACAAGTAAAAATGcc > 1:1595348/1‑64 (MQ=255) aCTTAGGGTAGGAGTCTGAAGAGCGCCCGCAATACCCGTCAGAAAGGCGACAAGTAAAAATGCCGCGGc > 1:822725/1‑69 (MQ=255) aCTTAGGGTAGGAGTCTGAAGAGCGCCCGCAATACCCGTCAGAAAGGCGACAAGTAAAAATGCCGCGGc > 1:1645146/1‑69 (MQ=255) cTTAGGGTAGGAGTCTGAAGAGCGCCCGCAATACCCGTCAGAAAGGCGACAAGTAAAAATGCcgc > 1:2376240/1‑65 (MQ=255) cTTAGGGTAGGAGTCTGAAGAGCGCCCGCAATACCCGTCAGAAAGGCGACAAGTAAAAATGCCGCGGCa > 1:186129/1‑69 (MQ=255) aGGAGTCTGACGAGCGCCCGCAATACCCGTCAGAAAGGCGACAAGTAAAAATGCCGCGGCAGTgag > 1:711160/1‑66 (MQ=255) ggAGTCTGAAGAGCGCCCGCAATACCCGTCAGAAAGGCGACAAGTAAAAATGCCGCGGCAGTGAGATCa > 1:1045265/1‑69 (MQ=255) tGAAGAGCGCCCGCAATACCCGTCAGAAAGGCGACAAGTaaa > 1:2556417/1‑42 (MQ=255) tGAAGAGCGCCCGCAATACCCGTCAGAAAGGCGACAAGTAAAAATGCCGCGGCAGTGAGATCaa < 1:554014/64‑1 (MQ=255) aaGAGCGCCCGCAATACCCGTCAGAAAGGCGACAAGTAAAAATGCCGCGGCAGTGAGATCAAGTAttt > 1:940320/1‑68 (MQ=255) | TAGGACGGGCTTTCAGTTCATCTGCGAGGAATATACTTAGGGTAGGAGTCTGAAGAGCGCCCGCAATACCCGTCAGAAAGGCGACAAGTAAAAATGCCGCGGCAGTGAGATCAAGTATTT > W3110S.gb/3803317‑3803436 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |