| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | W3110S.gb | 798,003 | C→T | 11.1% | A343V (GCG→GTG) | modC → | molybdate transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 798,003 | 0 | C | T | 11.1% | 129.8 / 6.9 | 45 | A343V (GCG→GTG) | modC | molybdate transporter subunit |
| Reads supporting (aligned to +/- strand): ref base C (18/22); new base T (3/2); total (21/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.52e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 | |||||||||||
GTATCAGCCCGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATGAACTGGGCAATGC > W3110S.gb/797946‑798069 | gTATCAGCCCGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCC‑‑TGGCTGTACGCGCAAATTAAAAg < 1:384067/68‑1 (MQ=255) tATCAGCCCGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAg < 1:2586021/69‑1 (MQ=255) tCAGCCCGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAgtg > 1:900095/1‑69 (MQ=255) tCAGCCCGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAgtg > 1:1335399/1‑69 (MQ=255) aGCCCGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAgtgtg > 1:3617389/1‑69 (MQ=255) aGCCCGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAgtgtg > 1:3510726/1‑69 (MQ=255) aGCCCGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAgtgtg > 1:2076748/1‑69 (MQ=255) aGCCCGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAgtgtg > 1:1721135/1‑69 (MQ=255) aGCCCGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAgtgtg > 1:1668456/1‑69 (MQ=255) ccGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCg < 1:2421934/69‑1 (MQ=255) gggCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATaa < 1:1654794/69‑1 (MQ=255) aaCTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTaa > 1:1689694/1‑43 (MQ=255) aaCTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTaa < 1:1978688/69‑1 (MQ=255) aaCTGGCGATCAAACATGGCCTGTGGCTGTACGCGCAAATTaa > 1:73819/1‑43 (MQ=255) tGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATc < 1:1847560/69‑1 (MQ=255) tGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATc < 1:2230017/69‑1 (MQ=255) tGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATc < 1:1517789/69‑1 (MQ=255) ggCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAg > 1:79091/1‑42 (MQ=255) tCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTg > 1:1890610/1‑68 (MQ=255) cAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTa > 1:1218179/1‑58 (MQ=255) cAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTa < 1:348720/58‑1 (MQ=255) cAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGc > 1:3299150/1‑69 (MQ=255) aaaCCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGc > 1:2005733/1‑68 (MQ=255) aCCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCta < 1:1152171/68‑1 (MQ=255) aCCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCta < 1:445066/68‑1 (MQ=255) aCCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCta < 1:1579645/68‑1 (MQ=255) aCCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCta > 1:2088453/1‑68 (MQ=255) ccTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCtata < 1:3595800/69‑1 (MQ=255) ccTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCtata < 1:1651837/69‑1 (MQ=255) ccTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCtata < 1:1816309/69‑1 (MQ=255) ccTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCtata < 1:603911/69‑1 (MQ=255) ccTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCtata < 1:1399477/69‑1 (MQ=255) ccTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCtata < 1:3192266/69‑1 (MQ=255) cTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATg > 1:1044450/1‑67 (MQ=255) cTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATg > 1:249788/1‑67 (MQ=255) tGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATGAACTGGGc < 1:2364169/68‑1 (MQ=255) tGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATGAACTGGGc < 1:2678611/68‑1 (MQ=255) tGTACGCGCAAATTAAAAGTGTGGCGATAACCGCCTGATTAAATc < 1:2061766/45‑1 (MQ=255) tACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATGa < 1:2911212/59‑1 (MQ=255) aCGTGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATc > 1:3360212/1‑42 (MQ=255) aCGTGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATc < 1:3452807/42‑1 (MQ=255) aCGTGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATc > 1:2523429/1‑42 (MQ=255) aCGTGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATc < 1:1249599/42‑1 (MQ=255) aCGTGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATc > 1:637500/1‑42 (MQ=255) aCGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATGAACTGGGCAATg > 1:3674414/1‑69 (MQ=255) cgcgCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATGAACTGGGCAATGc > 1:3081889/1‑69 (MQ=255) cgcgCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATGAACTGGGCAATGc > 1:564974/1‑69 (MQ=255) | GTATCAGCCCGTGGGCCAGGGATGAACTGGCGATCAAACCTGGCCTGTGGCTGTACGCGCAAATTAAAAGTGTGTCGATAACCGCCTGATTAAATCAGGTGGCTATAAATGAACTGGGCAATGC > W3110S.gb/797946‑798069 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |